| Definition | Prochlorococcus marinus str. MIT 9301, complete genome. |
|---|---|
| Accession | NC_009091 |
| Length | 1,641,879 |
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The map label for this gene is 126695362
Identifier: 126695362
GI number: 126695362
Start: 26172
End: 27263
Strand: Reverse
Name: 126695362
Synonym: P9301_00241
Alternate gene names: NA
Gene position: 27263-26172 (Counterclockwise)
Preceding gene: 126695365
Following gene: 126695361
Centisome position: 1.66
GC content: 33.52
Gene sequence:
>1092_bases ATGCAAAAATTCTTATCAAATCAGAACAAACTTTTCTTAATCATATCAATTGTAATTTTACAGGTTTTCCTCTTGAAACC GATTCAAGTACTAGCTGATTTACCTACTGGAAATGCAGTAAAAGACCCTAGTGCAATCCTCAGAAATGCACTTCCTATCA AGCAAGTCGAGTTGCAAGAAATTCAACATAAACTGGAAGAAACTAGTGATCTTGTAAGAGGAGGAAGATGGCCCGCCCTT TCAAAAACTGTTACAAAATGTCAATCTTTACTAAAAAAATACCAGAGTAAAATTATTCAAGAATTACCAAATGATAAAAA GGAAATTGCTGAAAAAACATTTTTAGAACTCAAAGAAAATTTTGATAGTCTTCAAGACTATTCTAAATCAAAGGATAAAT ACTCATTTATAGCGACCCGAAGAGACGCCTTAGATAAAATAGGTGGATTAGAAGAATATTTTCTACCAACTGAATTTCCA TACTCTATTCCTCAGGAATTTGATAATTTACCAAGATTACTTGGCAGGGCAAAAGTCAATATAAAAACTTCCAAAGGAGA TATGCAAGCTATTGTAGATGGATTTAACGCGCCACTTACAGCAGGAGCATTTATTGATTTATCTTCAAAAAACTTCTACA AAAATTTACCTATAAATAGAGCAGAAGAATTTTTTGTACTGCAAACAGGTGATCCAATCGGTGAAGAAATTGGCTATGTA GATCCTGAAACAAACGTAGAACGTCACGTTCCCTTAGAAATTAGAATTCCTAACGAAAAAGATACTTTTTATAATCAAAC TTTTGAAGATTTAGGTCTTTACACAGAGACGCCAACATTACCTTTTGCCACACTTGGAACGCTAGGATGGTCTCATTCAA ATACCGCAGTTGATGATGGCTCATCACAATTTTTCTTCTTTTTATATGAAGCAGAATTAAATCCAGCAGGTCGCAATTTA ATTGACGGGAGAAATGCTGCCTTTGGTTACGTTGTTGATGGATTTGATGTATTAGAAGAGCTTACTAAAGATGACACAAT CATTTCAATTGATGTTTTAGATGGGATTGAAAACCTCAAATTAAATGCATAA
Upstream 100 bases:
>100_bases AACTTGTCCATCCAATTCGATGGTAGTACCTGTGCGAAAATCGTTACTGGAAATCATTCCTGTATTACATCCCCAAGGAT CATAAACCTGCAAGAGTGCT
Downstream 100 bases:
>100_bases AAAAACATTAGAAGATATAGGAGAAAAAGAATTAATCAATAGGCTAGGAAAATTTATGCCTAAAAACCAAATTTCAGATG ATTGCGCTTTAATCAAAACT
Product: cyclophilin-type peptidyl-prolyl cis-trans isomerase
Products: NA
Alternate protein names: Putative thylakoid lumen PPIase; Putative thylakoid lumen rotamase [H]
Number of amino acids: Translated: 363; Mature: 363
Protein sequence:
>363_residues MQKFLSNQNKLFLIISIVILQVFLLKPIQVLADLPTGNAVKDPSAILRNALPIKQVELQEIQHKLEETSDLVRGGRWPAL SKTVTKCQSLLKKYQSKIIQELPNDKKEIAEKTFLELKENFDSLQDYSKSKDKYSFIATRRDALDKIGGLEEYFLPTEFP YSIPQEFDNLPRLLGRAKVNIKTSKGDMQAIVDGFNAPLTAGAFIDLSSKNFYKNLPINRAEEFFVLQTGDPIGEEIGYV DPETNVERHVPLEIRIPNEKDTFYNQTFEDLGLYTETPTLPFATLGTLGWSHSNTAVDDGSSQFFFFLYEAELNPAGRNL IDGRNAAFGYVVDGFDVLEELTKDDTIISIDVLDGIENLKLNA
Sequences:
>Translated_363_residues MQKFLSNQNKLFLIISIVILQVFLLKPIQVLADLPTGNAVKDPSAILRNALPIKQVELQEIQHKLEETSDLVRGGRWPAL SKTVTKCQSLLKKYQSKIIQELPNDKKEIAEKTFLELKENFDSLQDYSKSKDKYSFIATRRDALDKIGGLEEYFLPTEFP YSIPQEFDNLPRLLGRAKVNIKTSKGDMQAIVDGFNAPLTAGAFIDLSSKNFYKNLPINRAEEFFVLQTGDPIGEEIGYV DPETNVERHVPLEIRIPNEKDTFYNQTFEDLGLYTETPTLPFATLGTLGWSHSNTAVDDGSSQFFFFLYEAELNPAGRNL IDGRNAAFGYVVDGFDVLEELTKDDTIISIDVLDGIENLKLNA >Mature_363_residues MQKFLSNQNKLFLIISIVILQVFLLKPIQVLADLPTGNAVKDPSAILRNALPIKQVELQEIQHKLEETSDLVRGGRWPAL SKTVTKCQSLLKKYQSKIIQELPNDKKEIAEKTFLELKENFDSLQDYSKSKDKYSFIATRRDALDKIGGLEEYFLPTEFP YSIPQEFDNLPRLLGRAKVNIKTSKGDMQAIVDGFNAPLTAGAFIDLSSKNFYKNLPINRAEEFFVLQTGDPIGEEIGYV DPETNVERHVPLEIRIPNEKDTFYNQTFEDLGLYTETPTLPFATLGTLGWSHSNTAVDDGSSQFFFFLYEAELNPAGRNL IDGRNAAFGYVVDGFDVLEELTKDDTIISIDVLDGIENLKLNA
Specific function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Required for the assembly and stabilization of PSII [H]
COG id: COG0652
COG function: function code O; Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
Gene ontology:
Cell location: Cellular thylakoid lumen (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PPIase cyclophilin-type domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015891 - InterPro: IPR002130 - InterPro: IPR023222 [H]
Pfam domain/function: PF00160 Pro_isomerase [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 40956; Mature: 40956
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: PS50072 CSA_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKFLSNQNKLFLIISIVILQVFLLKPIQVLADLPTGNAVKDPSAILRNALPIKQVELQE CCHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHH IQHKLEETSDLVRGGRWPALSKTVTKCQSLLKKYQSKIIQELPNDKKEIAEKTFLELKEN HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH FDSLQDYSKSKDKYSFIATRRDALDKIGGLEEYFLPTEFPYSIPQEFDNLPRLLGRAKVN HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCEEE IKTSKGDMQAIVDGFNAPLTAGAFIDLSSKNFYKNLPINRAEEFFVLQTGDPIGEEIGYV EEECCCHHHHHHHCCCCCCCCCEEEEECCCCHHHCCCCCCCCEEEEEECCCCCHHHCCCC DPETNVERHVPLEIRIPNEKDTFYNQTFEDLGLYTETPTLPFATLGTLGWSHSNTAVDDG CCCCCCCEECCEEEECCCCCCHHHHCCHHHCCCEECCCCCCHHHHHHCCCCCCCCCCCCC SSQFFFFLYEAELNPAGRNLIDGRNAAFGYVVDGFDVLEELTKDDTIISIDVLDGIENLK CCEEEEEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHCCCCCEEEEEECCCCCCCC LNA CCC >Mature Secondary Structure MQKFLSNQNKLFLIISIVILQVFLLKPIQVLADLPTGNAVKDPSAILRNALPIKQVELQE CCHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHH IQHKLEETSDLVRGGRWPALSKTVTKCQSLLKKYQSKIIQELPNDKKEIAEKTFLELKEN HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH FDSLQDYSKSKDKYSFIATRRDALDKIGGLEEYFLPTEFPYSIPQEFDNLPRLLGRAKVN HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCEEE IKTSKGDMQAIVDGFNAPLTAGAFIDLSSKNFYKNLPINRAEEFFVLQTGDPIGEEIGYV EEECCCHHHHHHHCCCCCCCCCEEEEECCCCHHHCCCCCCCCEEEEEECCCCCHHHCCCC DPETNVERHVPLEIRIPNEKDTFYNQTFEDLGLYTETPTLPFATLGTLGWSHSNTAVDDG CCCCCCCEECCEEEECCCCCCHHHHCCHHHCCCEECCCCCCHHHHHHCCCCCCCCCCCCC SSQFFFFLYEAELNPAGRNLIDGRNAAFGYVVDGFDVLEELTKDDTIISIDVLDGIENLK CCEEEEEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHCCCCCEEEEEECCCCCCCC LNA CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]