| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is fadN [H]
Identifier: 126455250
GI number: 126455250
Start: 671116
End: 673551
Strand: Direct
Name: fadN [H]
Synonym: BURPS1106A_0696
Alternate gene names: 126455250
Gene position: 671116-673551 (Clockwise)
Preceding gene: 126452094
Following gene: 126454517
Centisome position: 16.83
GC content: 67.41
Gene sequence:
>2436_bases GTGAGCAATTTCAACATTCGCAAGGTTGCCGTGCTCGGCGCCGGCGTGATGGGCGCGCAGATCGCCGCGCATCTCGTCAA TGCGCGCGTGCCCGTGCTGCTGTTCGATCTGCCGGCCAAGGAAGGCCCGAAAAACGGCATCGCGCTGAAGGCGATCGAGA ACCTGAAGAAGCTGTCGCCCGCGCCGTTCGGCGTGAAGGACGACGCGAAATATCTCGAAGCCGCGAACTACGAGGACGAC ATCGCGAAGCTCGCCGAATGCGACCTCGTGATCGAGGCGATCGCCGAGCGGATGGACTGGAAGCACGACCTGTACAAGAA GGTCGCGCCGCACATCACATCGCACGCGATCTTCGCGACCAACACGTCGGGCCTGTCGATCACGACGCTGTCCGACGGCT TCGCCGACGAGCTGAAGGCGCGCTTCTGCGGCGTGCACTTCTTCAACCCGCCGCGCTACATGCACCTGGTCGAGCTGATC CCGACCGCGCACACGCGGCCGCAAATCCTCGACCAGCTCGAGACGTTCCTGACGAGCGTCGTCGGCAAGGGCGTCGTGCG CGCGAAGGACACGCCGAACTTCATCGCGAACCGCGTCGGCATTTTCTCGATCCTCGCCGTGATCACCGAGGCCGAGAAGT TCGGCCTGCGCTTCGACGAAGTCGACGACCTGACGGGCAGCCGCCTCGGCCGCGCGAAGTCGGCGACGTTCCGCACGGCG GACGTGGTCGGCCTCGACACGATGGCGCACGTGATCAAGACGATGCAGGACAACCTCGCCGACGATCCGTTCTTCCCGGT CTACAAGACGCCCGCCGTGCTCGCGAAGCTCGTCGAGCAGGGCGCGCTCGGGCAGAAGACGGGCGGCGGCTTCTACAAGA AGGAAGGCAAGGCGATCAAGGTGCTCGACGCGAAGACGGGCGCCTATGTCGACTCGGGCGCGAAGGCGGACGAAACCGTC GGCCGCATCCTGAAGCGCCCGCCCGCCGAGCGCCTGAAGCTGCTGCGCGAGACGCAGCATCCGCATGCGCAGTTCCTGTG GTCGATCTTCCGCGACGTGTTCCATTACATCGCGTTCCATCTCGAATCGATCGCCGACAACGCGCGTGACGTCGACCTCG CGATCCGCTGGGGCTTCGGCTGGAACGAAGGTCCGTTCGAGGGCTGGCAGGCCGCGGGCTGGAAGCAGGTTGCCGAGTGG GTGCAGGAGGACATCGCGGCCGGCCGCGCGCTCGCGAACGTGCCGCTGCCCGCATGGGTGCTCGACGGCGTCGTCGCCGA GAAGGGCGGCGTGCACACGGCCGAAGGCTCGTGGGCGCCGGCGGCGCAGCGTTTCGCGCCGCGCCCGGATCTCGCCGTCT ACGACAAGCAGGTGTTCCGCGCGCCCGTGTTCGGCGAAGCGGGGCGCGACCCGAAGACGTTCGGCAAGACGCTGTTCGAG ACCGACTCGGTGCGCGCATGGGTGGACGACCGCGCGGGCGAGGACGACGTGGTGATCGTGTCGTTCAAGTCGAAGATGAA CACGATCGGCCCGGGCGTGATCGACGGTCTCGCGCAGGCGATCGAGCTTGCCGAGAAGGACTACAAGGCGGTCGTGATCT GGCAGCCGAGCTCGCTCAAGCTCGGCAACCCGGGCGGCCCGTTCTCGGCCGGCGCGAACCTCGAAGAGGCGATGCCCGCG TTCATGATGGGCGGCGCGAAGGGCATCGAGCCGTTCGTGAAGAAGTTCCAGCAAGGCATGCTGCGCGTGAAGTACGCGAA CGTGCCGGTTGTCGCGGCGGTGTCGGGCCTCGCGCTCGGCGGCGGCTGCGAGCTGATGCTGCATAGCGCGAAGCGCGTGG TGCACGTCGAGAGCTATATCGGCCTCGTCGAGGTCGGCGTCGGCCTCGTGCCGGCGGGCGGCGGCCTGAAGGAAGCGGCG CTGCGCGCGGCGGACGCGGCGACGGCGGCGGGCATGACGAGCGAGCTGCTCAAGTTCCTGACGAAGCCGTTCGAGAACGC GGCGATGGCGAAGGTGTCGATGTCCGCGCACGAAGCGCGCGCGATGGGCTACGTGAAGCCGTCGGACACGATCGTGTTCA ACGTGTTCGAGCTGCTCGACGTCGCGAAGAAGGAAGCGCGCGGCCTGGCCGCCGCGGGCTACCGCGCGCCGCTGAAGGCG AAGGAAATCCCGGTGGCGGGCCGCTCGGCGATCGCGACGATCAAGGCGCAACTCGTCAACATGCGCGACGGCCGCTTCAT CAGCGACCACGATTTCCTGATCGCGAGCCGGATCGCGGAAGCGGTGTGCGGCGGCGACGTCGAGGCGGGCAGCACGGTCG ACGAGGAATGGCTGCTCGCGCTGGAGCGTCGCGCGTTCGTCGAGCTGCTCGGCACGCAGAAGACGCAGGAACGGATCATG GGCATGCTGCAGACCGGCAAGCCGGTTCGCAACTGA
Upstream 100 bases:
>100_bases CCGACAGAGGGGCGCTGCCTTCCCCTGCAAGCAGACGCTGGCACTCATACGCTGCGCGTCCTCACGACCGGCTACGCGCG GCTCAATCCGGAGGAGTCCC
Downstream 100 bases:
>100_bases TCGAACCGAGCGGACAACTTTGCATGGGATTGGGGTCGGCGCTGAAATGCCGACTCCGGTCGACCGCCCAAGGACATGGG ACCAGAGCAGGTGCTGAAGC
Product: 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 811; Mature: 810
Protein sequence:
>811_residues MSNFNIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNGIALKAIENLKKLSPAPFGVKDDAKYLEAANYEDD IAKLAECDLVIEAIAERMDWKHDLYKKVAPHITSHAIFATNTSGLSITTLSDGFADELKARFCGVHFFNPPRYMHLVELI PTAHTRPQILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVITEAEKFGLRFDEVDDLTGSRLGRAKSATFRTA DVVGLDTMAHVIKTMQDNLADDPFFPVYKTPAVLAKLVEQGALGQKTGGGFYKKEGKAIKVLDAKTGAYVDSGAKADETV GRILKRPPAERLKLLRETQHPHAQFLWSIFRDVFHYIAFHLESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEW VQEDIAAGRALANVPLPAWVLDGVVAEKGGVHTAEGSWAPAAQRFAPRPDLAVYDKQVFRAPVFGEAGRDPKTFGKTLFE TDSVRAWVDDRAGEDDVVIVSFKSKMNTIGPGVIDGLAQAIELAEKDYKAVVIWQPSSLKLGNPGGPFSAGANLEEAMPA FMMGGAKGIEPFVKKFQQGMLRVKYANVPVVAAVSGLALGGGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAA LRAADAATAAGMTSELLKFLTKPFENAAMAKVSMSAHEARAMGYVKPSDTIVFNVFELLDVAKKEARGLAAAGYRAPLKA KEIPVAGRSAIATIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGDVEAGSTVDEEWLLALERRAFVELLGTQKTQERIM GMLQTGKPVRN
Sequences:
>Translated_811_residues MSNFNIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNGIALKAIENLKKLSPAPFGVKDDAKYLEAANYEDD IAKLAECDLVIEAIAERMDWKHDLYKKVAPHITSHAIFATNTSGLSITTLSDGFADELKARFCGVHFFNPPRYMHLVELI PTAHTRPQILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVITEAEKFGLRFDEVDDLTGSRLGRAKSATFRTA DVVGLDTMAHVIKTMQDNLADDPFFPVYKTPAVLAKLVEQGALGQKTGGGFYKKEGKAIKVLDAKTGAYVDSGAKADETV GRILKRPPAERLKLLRETQHPHAQFLWSIFRDVFHYIAFHLESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEW VQEDIAAGRALANVPLPAWVLDGVVAEKGGVHTAEGSWAPAAQRFAPRPDLAVYDKQVFRAPVFGEAGRDPKTFGKTLFE TDSVRAWVDDRAGEDDVVIVSFKSKMNTIGPGVIDGLAQAIELAEKDYKAVVIWQPSSLKLGNPGGPFSAGANLEEAMPA FMMGGAKGIEPFVKKFQQGMLRVKYANVPVVAAVSGLALGGGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAA LRAADAATAAGMTSELLKFLTKPFENAAMAKVSMSAHEARAMGYVKPSDTIVFNVFELLDVAKKEARGLAAAGYRAPLKA KEIPVAGRSAIATIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGDVEAGSTVDEEWLLALERRAFVELLGTQKTQERIM GMLQTGKPVRN >Mature_810_residues SNFNIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNGIALKAIENLKKLSPAPFGVKDDAKYLEAANYEDDI AKLAECDLVIEAIAERMDWKHDLYKKVAPHITSHAIFATNTSGLSITTLSDGFADELKARFCGVHFFNPPRYMHLVELIP TAHTRPQILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVITEAEKFGLRFDEVDDLTGSRLGRAKSATFRTAD VVGLDTMAHVIKTMQDNLADDPFFPVYKTPAVLAKLVEQGALGQKTGGGFYKKEGKAIKVLDAKTGAYVDSGAKADETVG RILKRPPAERLKLLRETQHPHAQFLWSIFRDVFHYIAFHLESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEWV QEDIAAGRALANVPLPAWVLDGVVAEKGGVHTAEGSWAPAAQRFAPRPDLAVYDKQVFRAPVFGEAGRDPKTFGKTLFET DSVRAWVDDRAGEDDVVIVSFKSKMNTIGPGVIDGLAQAIELAEKDYKAVVIWQPSSLKLGNPGGPFSAGANLEEAMPAF MMGGAKGIEPFVKKFQQGMLRVKYANVPVVAAVSGLALGGGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAAL RAADAATAAGMTSELLKFLTKPFENAAMAKVSMSAHEARAMGYVKPSDTIVFNVFELLDVAKKEARGLAAAGYRAPLKAK EIPVAGRSAIATIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGDVEAGSTVDEEWLLALERRAFVELLGTQKTQERIMG MLQTGKPVRN
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: COG1250
COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase
Gene ontology:
Cell location: Mitochondria or Peroxisomes [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 3-hydroxyacyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI296179429, Length=300, Percent_Identity=33.6666666666667, Blast_Score=129, Evalue=9e-30, Organism=Homo sapiens, GI296179427, Length=315, Percent_Identity=33.015873015873, Blast_Score=125, Evalue=2e-28, Organism=Homo sapiens, GI20127408, Length=414, Percent_Identity=26.0869565217391, Blast_Score=93, Evalue=1e-18, Organism=Homo sapiens, GI261878539, Length=429, Percent_Identity=24.009324009324, Blast_Score=87, Evalue=5e-17, Organism=Homo sapiens, GI68989263, Length=429, Percent_Identity=24.009324009324, Blast_Score=87, Evalue=5e-17, Organism=Escherichia coli, GI1787661, Length=199, Percent_Identity=35.678391959799, Blast_Score=99, Evalue=9e-22, Organism=Escherichia coli, GI1790281, Length=228, Percent_Identity=27.6315789473684, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1788682, Length=341, Percent_Identity=25.5131964809384, Blast_Score=77, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17553560, Length=296, Percent_Identity=32.7702702702703, Blast_Score=120, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17563036, Length=294, Percent_Identity=31.6326530612245, Blast_Score=117, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17549919, Length=295, Percent_Identity=31.5254237288136, Blast_Score=114, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17558304, Length=389, Percent_Identity=26.4781491002571, Blast_Score=83, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17508953, Length=291, Percent_Identity=29.553264604811, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71985930, Length=413, Percent_Identity=22.2760290556901, Blast_Score=80, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17508951, Length=291, Percent_Identity=29.553264604811, Blast_Score=80, Evalue=4e-15, Organism=Caenorhabditis elegans, GI25144276, Length=289, Percent_Identity=29.757785467128, Blast_Score=80, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71985923, Length=300, Percent_Identity=27.3333333333333, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI19921000, Length=349, Percent_Identity=26.647564469914, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI24583077, Length=349, Percent_Identity=26.647564469914, Blast_Score=75, Evalue=3e-13, Organism=Drosophila melanogaster, GI24583079, Length=349, Percent_Identity=26.647564469914, Blast_Score=75, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =1.1.1.35 [H]
Molecular weight: Translated: 87664; Mature: 87533
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNFNIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNGIALKAIENLKKLSP CCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHCCC APFGVKDDAKYLEAANYEDDIAKLAECDLVIEAIAERMDWKHDLYKKVAPHITSHAIFAT CCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEEEE NTSGLSITTLSDGFADELKARFCGVHFFNPPRYMHLVELIPTAHTRPQILDQLETFLTSV CCCCEEEEEECCCHHHHHHHHHHCEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VGKGVVRAKDTPNFIANRVGIFSILAVITEAEKFGLRFDEVDDLTGSRLGRAKSATFRTA HCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHCCCCCCCCCCHH DVVGLDTMAHVIKTMQDNLADDPFFPVYKTPAVLAKLVEQGALGQKTGGGFYKKEGKAIK HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCEEE VLDAKTGAYVDSGAKADETVGRILKRPPAERLKLLRETQHPHAQFLWSIFRDVFHYIAFH EEECCCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEWVQEDIAAGRALANVPLPAWV HHHHHCCCCCEEEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCHHHCCCCHHHH LDGVVAEKGGVHTAEGSWAPAAQRFAPRPDLAVYDKQVFRAPVFGEAGRDPKTFGKTLFE HHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC TDSVRAWVDDRAGEDDVVIVSFKSKMNTIGPGVIDGLAQAIELAEKDYKAVVIWQPSSLK CCCHHEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEE LGNPGGPFSAGANLEEAMPAFMMGGAKGIEPFVKKFQQGMLRVKYANVPVVAAVSGLALG CCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHEEC GGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAALRAADAATAAGMTSELLKFL CCHHHHHHHHHHHEEHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCHHHHHHHHH TKPFENAAMAKVSMSAHEARAMGYVKPSDTIVFNVFELLDVAKKEARGLAAAGYRAPLKA HCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC KEIPVAGRSAIATIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGDVEAGSTVDEEWLLA CCCCCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH LERRAFVELLGTQKTQERIMGMLQTGKPVRN HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SNFNIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNGIALKAIENLKKLSP CCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHCCC APFGVKDDAKYLEAANYEDDIAKLAECDLVIEAIAERMDWKHDLYKKVAPHITSHAIFAT CCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEEEE NTSGLSITTLSDGFADELKARFCGVHFFNPPRYMHLVELIPTAHTRPQILDQLETFLTSV CCCCEEEEEECCCHHHHHHHHHHCEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VGKGVVRAKDTPNFIANRVGIFSILAVITEAEKFGLRFDEVDDLTGSRLGRAKSATFRTA HCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHCCCCCCCCCCHH DVVGLDTMAHVIKTMQDNLADDPFFPVYKTPAVLAKLVEQGALGQKTGGGFYKKEGKAIK HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCEEE VLDAKTGAYVDSGAKADETVGRILKRPPAERLKLLRETQHPHAQFLWSIFRDVFHYIAFH EEECCCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEWVQEDIAAGRALANVPLPAWV HHHHHCCCCCEEEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCHHHCCCCHHHH LDGVVAEKGGVHTAEGSWAPAAQRFAPRPDLAVYDKQVFRAPVFGEAGRDPKTFGKTLFE HHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC TDSVRAWVDDRAGEDDVVIVSFKSKMNTIGPGVIDGLAQAIELAEKDYKAVVIWQPSSLK CCCHHEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEE LGNPGGPFSAGANLEEAMPAFMMGGAKGIEPFVKKFQQGMLRVKYANVPVVAAVSGLALG CCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHEEC GGCELMLHSAKRVVHVESYIGLVEVGVGLVPAGGGLKEAALRAADAATAAGMTSELLKFL CCHHHHHHHHHHHEEHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCHHHHHHHHH TKPFENAAMAKVSMSAHEARAMGYVKPSDTIVFNVFELLDVAKKEARGLAAAGYRAPLKA HCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC KEIPVAGRSAIATIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGDVEAGSTVDEEWLLA CCCCCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH LERRAFVELLGTQKTQERIMGMLQTGKPVRN HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]