| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126455225
Identifier: 126455225
GI number: 126455225
Start: 3607235
End: 3609004
Strand: Direct
Name: 126455225
Synonym: BURPS1106A_3692
Alternate gene names: NA
Gene position: 3607235-3609004 (Clockwise)
Preceding gene: 126451514
Following gene: 126453814
Centisome position: 90.44
GC content: 61.69
Gene sequence:
>1770_bases GTGAAAATGAGCCATACCAAGGGGTTTGCCAAGCTGGCATCGGTCGTCGCAGTCGGAGCGGCGCTCACGGCATGCGGGGG CGGTGGAGGATCTGGTACCAGTACGACGACAGCCATCACAAATACCCAGCTCACGGGCAAGGCGATCGACGGCTACCTGG CGGGCGCTACTGTCTGCTTCGATAACGGTCACGGTGCGTGCGATCCGAGCCTGCCGTCCACCACGACCGATGCCAGCGGC AATTACACGCTCAACGTTTCCAGCAACGTAACCGGCAAGCAGCTCGACGTGCTCGTCACCTCGAACACGACCGACGGCGG CAGCAAGTTCACCAGCACGTTCGCGATGTCGGCGATCGTTTCCGGCAACTCGCAAAACGTCACGCCACTCACGACGATGG TGGTCGCGCAGCTGAAGGCGGGGAAGTCGCAAGCAGATGCGATCACAGCCGTGCAGAACCTCATCGGCAGCAACGTTGAT CTGAATGCGGACTATGTAGGCAACGGCGACGCCAGAACGACAGCTACTGCGGCTAGCATGGTCAGTCACATGACGGCGCT TGCCGGCCAGGGGCCAATCTCGTGGTCGCAAGTGCAGGCAACCATGAACGCGTACGCTGCAAAAGGGTCGGTCATCGGCG TGCAGCAATCCGATGTCGATGCACAGCTCACTAATCCTGCCTATAGCTCGCCGGTCGATGCGACGACGGCGCTTGCTAGT CCGCTTTACACGGTTGATGGGGACCTTTCGCAGTTCATCGTCGGGAGCAGCATTTCGGCGGCGCTTTCGCCGGTTCGCGA GAACTTCACGCTCTCCGGTTCGACGCTTTCGGTTACGCAAGAAGCTCAGAGCAACGGCGCGTGGTCGGCGGCTTCGCCGG TCGGCAGTTACGACGCGGGTTTCAGCGGTTCTTGGGTGTCCAATGACGCTGGCGTTGGTGCATACGCCATGAAAGCGGAC GGCACATGGACCAGCTGGTTGACGGCCGCGCAGTTGCATCCGTCGTACAGCCTATCCACGGTCGGCTCCAAGCTCGTCGG CACCGATCCGAATACGGGCGACGCGCTCACGGTCGCCTACCGGATGATCGATGTCAGCGGCCAGCCGCTCTCGAGCGCGC TGCAGATCGACTATCGGAATCCCGTGCGCGGAGCCATGACGGGCACGTTTCCGTCCGGGACGACCGCCTACCTTGCTACG ACCGCCTATGCGAACGATCGCCTTATCCTCGTCAACCAAGGGTTCGGTATGCCTTGGATCAACGGCGCGGACGTGAACTC GTCGACGATCGTCAATGGCTCGATTCTGTACACCCTCGGCGACCCCAGCACGACTTACACGGCGGTGCAACAGGCCGTTG GGACGCAGACGGACATCGCGGGTGGGTGCCTGCTGCTCAGCATTCAGGCAGGCGGTGTCGCGCAAGTGGTCCAAAGCGGT AAGTCGGGATGCAACTACGGCAATGTATCGCTCTCGTTCCCGGTCACCGGCAGCTGGTCGGTCTACTCGCGCAATGCCAA CGTCATCACGATCAGCCTGCCGAAGTCCGTTGGTGCGCCGACCGTGCCAATCGATGATGACATCAAGAATGTGATCAACG CTGGCGGTTCGCTCGTCGTCGGCCTGATGAACGGCAAGCTCATGGGTGGTTACATGCTACCGGCCAGCCAGCCGCAAACG GTCGCTCAATTCCCGGCAGCGACGACCGACACCATCGCCGCGTCGATGCGCGCCGCAGCCGCGAGCTTGGGCATCCAACA AAACCCATAA
Upstream 100 bases:
>100_bases ATAGCTGCCTAGCGCGATCGCGCATGAGCCGCGCATGTCGTTTGGGCAATCAAAGCATCGCTCCCGCTTCAGCGGAGCGT CGTTCAAAGGAAATGAAAAG
Downstream 100 bases:
>100_bases GGACCTGCGTCCTTCCTCTTTCGCTCCCGGCGGCCTTACCTCGGGAGCGATCTCTTCCTTACAAGACATCATGAAACAGT TCAGCCGATTTTCCGCGACT
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 589; Mature: 589
Protein sequence:
>589_residues MKMSHTKGFAKLASVVAVGAALTACGGGGGSGTSTTTAITNTQLTGKAIDGYLAGATVCFDNGHGACDPSLPSTTTDASG NYTLNVSSNVTGKQLDVLVTSNTTDGGSKFTSTFAMSAIVSGNSQNVTPLTTMVVAQLKAGKSQADAITAVQNLIGSNVD LNADYVGNGDARTTATAASMVSHMTALAGQGPISWSQVQATMNAYAAKGSVIGVQQSDVDAQLTNPAYSSPVDATTALAS PLYTVDGDLSQFIVGSSISAALSPVRENFTLSGSTLSVTQEAQSNGAWSAASPVGSYDAGFSGSWVSNDAGVGAYAMKAD GTWTSWLTAAQLHPSYSLSTVGSKLVGTDPNTGDALTVAYRMIDVSGQPLSSALQIDYRNPVRGAMTGTFPSGTTAYLAT TAYANDRLILVNQGFGMPWINGADVNSSTIVNGSILYTLGDPSTTYTAVQQAVGTQTDIAGGCLLLSIQAGGVAQVVQSG KSGCNYGNVSLSFPVTGSWSVYSRNANVITISLPKSVGAPTVPIDDDIKNVINAGGSLVVGLMNGKLMGGYMLPASQPQT VAQFPAATTDTIAASMRAAAASLGIQQNP
Sequences:
>Translated_589_residues MKMSHTKGFAKLASVVAVGAALTACGGGGGSGTSTTTAITNTQLTGKAIDGYLAGATVCFDNGHGACDPSLPSTTTDASG NYTLNVSSNVTGKQLDVLVTSNTTDGGSKFTSTFAMSAIVSGNSQNVTPLTTMVVAQLKAGKSQADAITAVQNLIGSNVD LNADYVGNGDARTTATAASMVSHMTALAGQGPISWSQVQATMNAYAAKGSVIGVQQSDVDAQLTNPAYSSPVDATTALAS PLYTVDGDLSQFIVGSSISAALSPVRENFTLSGSTLSVTQEAQSNGAWSAASPVGSYDAGFSGSWVSNDAGVGAYAMKAD GTWTSWLTAAQLHPSYSLSTVGSKLVGTDPNTGDALTVAYRMIDVSGQPLSSALQIDYRNPVRGAMTGTFPSGTTAYLAT TAYANDRLILVNQGFGMPWINGADVNSSTIVNGSILYTLGDPSTTYTAVQQAVGTQTDIAGGCLLLSIQAGGVAQVVQSG KSGCNYGNVSLSFPVTGSWSVYSRNANVITISLPKSVGAPTVPIDDDIKNVINAGGSLVVGLMNGKLMGGYMLPASQPQT VAQFPAATTDTIAASMRAAAASLGIQQNP >Mature_589_residues MKMSHTKGFAKLASVVAVGAALTACGGGGGSGTSTTTAITNTQLTGKAIDGYLAGATVCFDNGHGACDPSLPSTTTDASG NYTLNVSSNVTGKQLDVLVTSNTTDGGSKFTSTFAMSAIVSGNSQNVTPLTTMVVAQLKAGKSQADAITAVQNLIGSNVD LNADYVGNGDARTTATAASMVSHMTALAGQGPISWSQVQATMNAYAAKGSVIGVQQSDVDAQLTNPAYSSPVDATTALAS PLYTVDGDLSQFIVGSSISAALSPVRENFTLSGSTLSVTQEAQSNGAWSAASPVGSYDAGFSGSWVSNDAGVGAYAMKAD GTWTSWLTAAQLHPSYSLSTVGSKLVGTDPNTGDALTVAYRMIDVSGQPLSSALQIDYRNPVRGAMTGTFPSGTTAYLAT TAYANDRLILVNQGFGMPWINGADVNSSTIVNGSILYTLGDPSTTYTAVQQAVGTQTDIAGGCLLLSIQAGGVAQVVQSG KSGCNYGNVSLSFPVTGSWSVYSRNANVITISLPKSVGAPTVPIDDDIKNVINAGGSLVVGLMNGKLMGGYMLPASQPQT VAQFPAATTDTIAASMRAAAASLGIQQNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59474; Mature: 59474
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMSHTKGFAKLASVVAVGAALTACGGGGGSGTSTTTAITNTQLTGKAIDGYLAGATVCF CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECEECCHHHCCEEECEEEEE DNGHGACDPSLPSTTTDASGNYTLNVSSNVTGKQLDVLVTSNTTDGGSKFTSTFAMSAIV ECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHEEEEE SGNSQNVTPLTTMVVAQLKAGKSQADAITAVQNLIGSNVDLNADYVGNGDARTTATAASM ECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHH VSHMTALAGQGPISWSQVQATMNAYAAKGSVIGVQQSDVDAQLTNPAYSSPVDATTALAS HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCEECCCCCCCCCCHHHHHHC PLYTVDGDLSQFIVGSSISAALSPVRENFTLSGSTLSVTQEAQSNGAWSAASPVGSYDAG CCEEECCCHHHHHHCCCHHHHHHHHHHCEEECCCEEEEEHHHHCCCCCCCCCCCCCCCCC FSGSWVSNDAGVGAYAMKADGTWTSWLTAAQLHPSYSLSTVGSKLVGTDPNTGDALTVAY CCCCCCCCCCCCCEEEEECCCCHHHHEEHHHCCCCCCHHHHCCEEECCCCCCCCEEEEEE RMIDVSGQPLSSALQIDYRNPVRGAMTGTFPSGTTAYLATTAYANDRLILVNQGFGMPWI EEEECCCCCCCCEEEEECCCCCCCCEECCCCCCCEEEEEEEEECCCEEEEEECCCCCCCC NGADVNSSTIVNGSILYTLGDPSTTYTAVQQAVGTQTDIAGGCLLLSIQAGGVAQVVQSG CCCCCCCCEEECCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHCC KSGCNYGNVSLSFPVTGSWSVYSRNANVITISLPKSVGAPTVPIDDDIKNVINAGGSLVV CCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEE GLMNGKLMGGYMLPASQPQTVAQFPAATTDTIAASMRAAAASLGIQQNP EEECCEEECCEECCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MKMSHTKGFAKLASVVAVGAALTACGGGGGSGTSTTTAITNTQLTGKAIDGYLAGATVCF CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECEECCHHHCCEEECEEEEE DNGHGACDPSLPSTTTDASGNYTLNVSSNVTGKQLDVLVTSNTTDGGSKFTSTFAMSAIV ECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHEEEEE SGNSQNVTPLTTMVVAQLKAGKSQADAITAVQNLIGSNVDLNADYVGNGDARTTATAASM ECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHH VSHMTALAGQGPISWSQVQATMNAYAAKGSVIGVQQSDVDAQLTNPAYSSPVDATTALAS HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCEECCCCCCCCCCHHHHHHC PLYTVDGDLSQFIVGSSISAALSPVRENFTLSGSTLSVTQEAQSNGAWSAASPVGSYDAG CCEEECCCHHHHHHCCCHHHHHHHHHHCEEECCCEEEEEHHHHCCCCCCCCCCCCCCCCC FSGSWVSNDAGVGAYAMKADGTWTSWLTAAQLHPSYSLSTVGSKLVGTDPNTGDALTVAY CCCCCCCCCCCCCEEEEECCCCHHHHEEHHHCCCCCCHHHHCCEEECCCCCCCCEEEEEE RMIDVSGQPLSSALQIDYRNPVRGAMTGTFPSGTTAYLATTAYANDRLILVNQGFGMPWI EEEECCCCCCCCEEEEECCCCCCCCEECCCCCCCEEEEEEEEECCCEEEEEECCCCCCCC NGADVNSSTIVNGSILYTLGDPSTTYTAVQQAVGTQTDIAGGCLLLSIQAGGVAQVVQSG CCCCCCCCEEECCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHCC KSGCNYGNVSLSFPVTGSWSVYSRNANVITISLPKSVGAPTVPIDDDIKNVINAGGSLVV CCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEE GLMNGKLMGGYMLPASQPQTVAQFPAATTDTIAASMRAAAASLGIQQNP EEECCEEECCEECCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA