Click here to switch to the map view.

The map label for this gene is ydfD [H]

Identifier: 126455072

GI number: 126455072

Start: 1146010

End: 1147464

Strand: Direct

Name: ydfD [H]

Synonym: BURPS1106A_1166

Alternate gene names: 126455072

Gene position: 1146010-1147464 (Clockwise)

Preceding gene: 126454260

Following gene: 126451945

Centisome position: 28.73

GC content: 69.9

Gene sequence:

>1455_bases
ATGTCCACCGTCCCGCTTGCGCAGATCCCCGCGCCGCACGATACCGCGACGCTCACGCTCGTCGATCAGCTCGTGCAATG
GGCGCGCCGCCGGATCGACGAGCGCGTGTTCCGGCCCGGCATGCGGATGCCGTCGATCCGCAAGCTCGCGCTCGACAAGA
GCGTGTCGCGCTTCACGGTCGTCGAGGCGTACGAGCGGCTCGTCGCGCAGGGCTATCTCGATTCGCGGCGCGGCTCCGGC
TTCTACGTGCGCGAGCGCGCGCCCGGGCAGCAGCCGGTGGGCGCATCGGGCGGCGCGCGCGCGCAGCCCGTGCACAACAC
GATCGACGTCGTCTGGCTGCTGCGCAACATGCTGCACACGGTCAGCCCGGAAAAGGGGCCGGGGCTCGGCTATCTGCCGA
GCCGCTGGCTCGACGGCGAACTGATCACGAGCGCGTTGCGCGCGCTCGGCCGGCAATCGGGCGCGCAGATGCTCGGCTTC
GGCAGCGCGCAGGGCTTCCTGCCGCTGCGGCAGCAACTGCAGACGCGCCTCGCCGAATTCGAGATCGGCGCGACGCCCGA
TCAGCTCGTGCTCGTGTCCGGCATCACGCAGGCGATCGATCTGATCGCGCGCCACTGCGTGCGCCCGGGCGACGCGGTGA
TCGTCGGCGATCCGGCCTGGTTCCAGATGTTCGGGCGCTTCGCGTCGCAGGGCGCGCAGCTCGTCGGGATGCCGTACACG
CCGGACGGCCCCGATCTCGACGCGCTCGAGAACCTCGTGCAGATGTGGCGCCCGAAGATGCTCGTGATCAACTCGGTGCT
GCACAATCCGACGGGCACGTCGCTGTCGGCCGCGCAGGCGTTCCGGATCCTGAAGCTCGCGGAGGCGTACGATTTCCTCG
TCGTCGAGGACGACGTCTACGGCGACCTGTGCCCGCCGAGCTATCCGGCGACGCGCCTGGCGAGCCTCGACCAGTTAAGG
CGCGTGATCTTCCTCGGCAGCTTCTCGAAGACGCTCGCCGCGAACCTGCGGGTCGGCTACATCGCGTGCGCGCCGGAACT
CGCGAAGGCGCTGACGGATCAGAAAATGCTCGTCGGGATGACGACGCCCGAGCTCAACGAGCGCGTGCTGTACAAGGTGC
TCACGGAAGGGCACTACCGGCGCCACGTCGAGCGGCTGCGCGCGCGGCTCGACGGCGTGCGCGACAAGACCGCGCGGATG
CTCGAGCGCACCGGCATGCGGCTCTTCACGATGCCGGCGGCGGGGATGTTCCTGTGGGCCGACACGGGCGTCGATTCGGA
CGCGCTCGCCGCGGCCGCGCACGAGGAAGGTTTCCTGCTCACGCCGGGGAGCCTCTTCTCGCCGCAGCAGTCGCCTTCGA
CGTGGACGCGCTTTAACGTCGCGAACTGCGGCGATCCGGCGCTGCCCGCGTTCCTCGGCCGCTATCTCGACAGCGTGAAC
CGCCGCGCCTCTTGA

Upstream 100 bases:

>100_bases
CCCGCGCCGCATCGCCGTCGAAAAAACTGTAATCGCGGCGACCGGCACAGTAACGGTACAATCGCTGCGATACTCTTCGG
TACAGTTGGAGGCCTCCCCG

Downstream 100 bases:

>100_bases
AATGCCCGCATGCGCCCCAACATGGGGCGCGGTCGAGCGTTGCGGCGGTCGGCACGCCGCCGTCGCGCGCCGGCTCCGAT
GGGGTCGTGAATCGAAACTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MSTVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTVVEAYERLVAQGYLDSRRGSG
FYVRERAPGQQPVGASGGARAQPVHNTIDVVWLLRNMLHTVSPEKGPGLGYLPSRWLDGELITSALRALGRQSGAQMLGF
GSAQGFLPLRQQLQTRLAEFEIGATPDQLVLVSGITQAIDLIARHCVRPGDAVIVGDPAWFQMFGRFASQGAQLVGMPYT
PDGPDLDALENLVQMWRPKMLVINSVLHNPTGTSLSAAQAFRILKLAEAYDFLVVEDDVYGDLCPPSYPATRLASLDQLR
RVIFLGSFSKTLAANLRVGYIACAPELAKALTDQKMLVGMTTPELNERVLYKVLTEGHYRRHVERLRARLDGVRDKTARM
LERTGMRLFTMPAAGMFLWADTGVDSDALAAAAHEEGFLLTPGSLFSPQQSPSTWTRFNVANCGDPALPAFLGRYLDSVN
RRAS

Sequences:

>Translated_484_residues
MSTVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTVVEAYERLVAQGYLDSRRGSG
FYVRERAPGQQPVGASGGARAQPVHNTIDVVWLLRNMLHTVSPEKGPGLGYLPSRWLDGELITSALRALGRQSGAQMLGF
GSAQGFLPLRQQLQTRLAEFEIGATPDQLVLVSGITQAIDLIARHCVRPGDAVIVGDPAWFQMFGRFASQGAQLVGMPYT
PDGPDLDALENLVQMWRPKMLVINSVLHNPTGTSLSAAQAFRILKLAEAYDFLVVEDDVYGDLCPPSYPATRLASLDQLR
RVIFLGSFSKTLAANLRVGYIACAPELAKALTDQKMLVGMTTPELNERVLYKVLTEGHYRRHVERLRARLDGVRDKTARM
LERTGMRLFTMPAAGMFLWADTGVDSDALAAAAHEEGFLLTPGSLFSPQQSPSTWTRFNVANCGDPALPAFLGRYLDSVN
RRAS
>Mature_483_residues
STVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTVVEAYERLVAQGYLDSRRGSGF
YVRERAPGQQPVGASGGARAQPVHNTIDVVWLLRNMLHTVSPEKGPGLGYLPSRWLDGELITSALRALGRQSGAQMLGFG
SAQGFLPLRQQLQTRLAEFEIGATPDQLVLVSGITQAIDLIARHCVRPGDAVIVGDPAWFQMFGRFASQGAQLVGMPYTP
DGPDLDALENLVQMWRPKMLVINSVLHNPTGTSLSAAQAFRILKLAEAYDFLVVEDDVYGDLCPPSYPATRLASLDQLRR
VIFLGSFSKTLAANLRVGYIACAPELAKALTDQKMLVGMTTPELNERVLYKVLTEGHYRRHVERLRARLDGVRDKTARML
ERTGMRLFTMPAAGMFLWADTGVDSDALAAAAHEEGFLLTPGSLFSPQQSPSTWTRFNVANCGDPALPAFLGRYLDSVNR
RAS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=312, Percent_Identity=26.9230769230769, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI33469970, Length=312, Percent_Identity=26.9230769230769, Blast_Score=102, Evalue=6e-22,
Organism=Escherichia coli, GI1790797, Length=456, Percent_Identity=26.9736842105263, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1787710, Length=454, Percent_Identity=26.431718061674, Blast_Score=130, Evalue=2e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53300; Mature: 53169

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHH
VEAYERLVAQGYLDSRRGSGFYVRERAPGQQPVGASGGARAQPVHNTIDVVWLLRNMLHT
HHHHHHHHHHCCHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
VSPEKGPGLGYLPSRWLDGELITSALRALGRQSGAQMLGFGSAQGFLPLRQQLQTRLAEF
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
EIGATPDQLVLVSGITQAIDLIARHCVRPGDAVIVGDPAWFQMFGRFASQGAQLVGMPYT
CCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCEEEECCCC
PDGPDLDALENLVQMWRPKMLVINSVLHNPTGTSLSAAQAFRILKLAEAYDFLVVEDDVY
CCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCEEEEECCCC
GDLCPPSYPATRLASLDQLRRVIFLGSFSKTLAANLRVGYIACAPELAKALTDQKMLVGM
CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEEEECCHHHHHHHCCCCEEEEC
TTPELNERVLYKVLTEGHYRRHVERLRARLDGVRDKTARMLERTGMRLFTMPAAGMFLWA
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCCEEEEE
DTGVDSDALAAAAHEEGFLLTPGSLFSPQQSPSTWTRFNVANCGDPALPAFLGRYLDSVN
CCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
RRAS
CCCC
>Mature Secondary Structure 
STVPLAQIPAPHDTATLTLVDQLVQWARRRIDERVFRPGMRMPSIRKLALDKSVSRFTV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHH
VEAYERLVAQGYLDSRRGSGFYVRERAPGQQPVGASGGARAQPVHNTIDVVWLLRNMLHT
HHHHHHHHHHCCHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
VSPEKGPGLGYLPSRWLDGELITSALRALGRQSGAQMLGFGSAQGFLPLRQQLQTRLAEF
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
EIGATPDQLVLVSGITQAIDLIARHCVRPGDAVIVGDPAWFQMFGRFASQGAQLVGMPYT
CCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCEEEECCCC
PDGPDLDALENLVQMWRPKMLVINSVLHNPTGTSLSAAQAFRILKLAEAYDFLVVEDDVY
CCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCEEEEECCCC
GDLCPPSYPATRLASLDQLRRVIFLGSFSKTLAANLRVGYIACAPELAKALTDQKMLVGM
CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEEEECCHHHHHHHCCCCEEEEC
TTPELNERVLYKVLTEGHYRRHVERLRARLDGVRDKTARMLERTGMRLFTMPAAGMFLWA
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCCEEEEE
DTGVDSDALAAAAHEEGFLLTPGSLFSPQQSPSTWTRFNVANCGDPALPAFLGRYLDSVN
CCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
RRAS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]