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The map label for this gene is ymdB [C]

Identifier: 126454783

GI number: 126454783

Start: 467295

End: 467861

Strand: Direct

Name: ymdB [C]

Synonym: BURPS1106A_0502

Alternate gene names: 126454783

Gene position: 467295-467861 (Clockwise)

Preceding gene: 126451689

Following gene: 126453192

Centisome position: 11.72

GC content: 71.08

Gene sequence:

>567_bases
GTGCGCATCGCGATCCGCTCGTTGGAGGGCGCCATGCCGAACATCGGTCCGACCTCGGTCGAGGCGTGCGTCGTCGACAT
CACGACGCTCACGCTCGACGCGATCGTCAATGCGGCCAACGCGTCGCTGCTGGGCGGCGGCGGCGTCGACGGCGCGATCC
ACCGCGCGGCGGGGCCCGAGCTCGTGAAGGAATGCGCGACGCTCGGCGGCTGCGCGACGGGCGACGCGAAGCTCACGCGC
GGCTATCGCCTGCCCGCGAAATACGTGATCCACACGGTCGGCCCGGTATGGCGCGGCGGCGGGCATGGCGAGGCCGAGCT
GCTTGCGTCGTGCTACCGGCGCTCGCTCGAGGTGGCGGCCGGCGCGGGCTGTGCGTCGATCGCGTTTCCGGCGATCAGTT
GCGGCGTATATCGCTTCCCGCCCGCCGACGCGACTGCGATCGCGGTGCGCACGGTGGCCGGCGCGCTCGCGGGCGAGCTG
GCCGATGCACGATTCGAGCGCGTCGTGTTCGCGTGCTTCTCCAGCGATATGCTCGATTTCTATCGCACGGCGCTCGTCCG
GTTCTGA

Upstream 100 bases:

>100_bases
CGCCAATTCAATCCGAACCGAACGCGGGCGCGCTGCACGGCGGCGCGCCCGCGCTTGTGCTTGCGCGCTGCATGCGCGCG
CGGGCGAGCGGGCGTACGCT

Downstream 100 bases:

>100_bases
CGGCGTTTGTTCCGGTTTGCCGGCGCCATGTCGACGTCGATATCGATGCCGATCGCTTCGCTCGGGTAGGCGCCTCGGGT
CGCGGCTCGGCGCCGGCGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MRIAIRSLEGAMPNIGPTSVEACVVDITTLTLDAIVNAANASLLGGGGVDGAIHRAAGPELVKECATLGGCATGDAKLTR
GYRLPAKYVIHTVGPVWRGGGHGEAELLASCYRRSLEVAAGAGCASIAFPAISCGVYRFPPADATAIAVRTVAGALAGEL
ADARFERVVFACFSSDMLDFYRTALVRF

Sequences:

>Translated_188_residues
MRIAIRSLEGAMPNIGPTSVEACVVDITTLTLDAIVNAANASLLGGGGVDGAIHRAAGPELVKECATLGGCATGDAKLTR
GYRLPAKYVIHTVGPVWRGGGHGEAELLASCYRRSLEVAAGAGCASIAFPAISCGVYRFPPADATAIAVRTVAGALAGEL
ADARFERVVFACFSSDMLDFYRTALVRF
>Mature_188_residues
MRIAIRSLEGAMPNIGPTSVEACVVDITTLTLDAIVNAANASLLGGGGVDGAIHRAAGPELVKECATLGGCATGDAKLTR
GYRLPAKYVIHTVGPVWRGGGHGEAELLASCYRRSLEVAAGAGCASIAFPAISCGVYRFPPADATAIAVRTVAGALAGEL
ADARFERVVFACFSSDMLDFYRTALVRF

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=166, Percent_Identity=52.4096385542169, Blast_Score=162, Evalue=2e-40,
Organism=Homo sapiens, GI13569840, Length=164, Percent_Identity=50.609756097561, Blast_Score=146, Evalue=1e-35,
Organism=Homo sapiens, GI207450721, Length=148, Percent_Identity=41.2162162162162, Blast_Score=107, Evalue=9e-24,
Organism=Homo sapiens, GI8923143, Length=148, Percent_Identity=41.2162162162162, Blast_Score=106, Evalue=1e-23,
Organism=Homo sapiens, GI154813199, Length=123, Percent_Identity=39.8373983739837, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371718, Length=142, Percent_Identity=34.5070422535211, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371716, Length=142, Percent_Identity=34.5070422535211, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371714, Length=142, Percent_Identity=34.5070422535211, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371712, Length=142, Percent_Identity=34.5070422535211, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371710, Length=142, Percent_Identity=34.5070422535211, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371706, Length=142, Percent_Identity=34.5070422535211, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI20336746, Length=174, Percent_Identity=27.0114942528736, Blast_Score=73, Evalue=1e-13,
Organism=Escherichia coli, GI1787283, Length=174, Percent_Identity=48.2758620689655, Blast_Score=150, Evalue=7e-38,
Organism=Caenorhabditis elegans, GI17538214, Length=152, Percent_Identity=50, Blast_Score=122, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24586353, Length=133, Percent_Identity=40.6015037593985, Blast_Score=89, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19375; Mature: 19375

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIAIRSLEGAMPNIGPTSVEACVVDITTLTLDAIVNAANASLLGGGGVDGAIHRAAGPE
CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHCCCHH
LVKECATLGGCATGDAKLTRGYRLPAKYVIHTVGPVWRGGGHGEAELLASCYRRSLEVAA
HHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHC
GAGCASIAFPAISCGVYRFPPADATAIAVRTVAGALAGELADARFERVVFACFSSDMLDF
CCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRTALVRF
HHHHHHCC
>Mature Secondary Structure
MRIAIRSLEGAMPNIGPTSVEACVVDITTLTLDAIVNAANASLLGGGGVDGAIHRAAGPE
CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHCCCHH
LVKECATLGGCATGDAKLTRGYRLPAKYVIHTVGPVWRGGGHGEAELLASCYRRSLEVAA
HHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHC
GAGCASIAFPAISCGVYRFPPADATAIAVRTVAGALAGELADARFERVVFACFSSDMLDF
CCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRTALVRF
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]