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The map label for this gene is yegW [H]

Identifier: 126454767

GI number: 126454767

Start: 518600

End: 519334

Strand: Direct

Name: yegW [H]

Synonym: BURPS1106A_0551

Alternate gene names: 126454767

Gene position: 518600-519334 (Clockwise)

Preceding gene: 126451650

Following gene: 126453864

Centisome position: 13.0

GC content: 74.42

Gene sequence:

>735_bases
ATGGACATCGGCTGGTCGACGCTCGCGCCCGACGCGCGCAGCGATACCCCGCTCTACCTGCAGCTCGCCCGCAATCTCGC
GGGCGCGATTCACGGCGGCGCCTGGCGCGCCGGCGAGGCGCTGCCGTCCGAGCGCGGCCTGTCGGCGGCGGCGGGCGTCT
CGCGCATCACCGCGCGCCGCGCGCTCGCCCTGCTCGTCGAGCAGGGGCTCATCCGGCGCGTGCGCGGCGCGGGCAGCTTC
ATCACGCCGCGCGTGGCCGATCCGCTGTCGCGGCTCGTCGGGTTCACCGCGAAGATGCGCCAGCGCGGCTTCGCGCCCGA
TTCGGTGTGGCTCGCGCGCAGCCTGCGCGCGGCGAGCCGCGACGAGCTCGCGCGCTTCGGCCTGTCGCCCGGCGCGACGG
TCGCGCGCCTCGAGCGGTTGCGGCGCGCGGACGGCGTCGTGATGGCGTACGAGCGCTCGACGCTGCCCGCCAGCTGCGTG
CCCGAGCCGCAGGTGCTCGAAGGCTCGCTGTACGGCTACCTGCAGTCGCGCGGTCTCGACGTGGTGCGCGCGTCGCAGCG
CTTTCGCGCGGTGAACGCGTCGGCCGATGTCGCGCAGTGGCTCGGCCTCGCGCCCGGCGCGGCGCTCCTCGTCATCACGC
GGATCGGTTACGGCGCCGACCGTCGGGCGATCGAGGCGACCGAAACCTATTGCCGCGACGATTACTACGATTTCGTCGCC
GAGCTGAAACGCTGA

Upstream 100 bases:

>100_bases
GGCCGGCCACGAATTGACTGGTATTATTTTGGTTATATAATGGCCTCGCTTTTTCGGAAGACGCCTGTGCATGCCCTTCC
GTTTCCGTACCCGGAGACCT

Downstream 100 bases:

>100_bases
CACGACAGACTGTCCGCGGCGGCCCGGCGACTCGCAAGCCCTCTCGCAAGCAGCAAGCAGCACCGCCCCCATACGCATCA
CCAGATATAGAGAACGTCAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MDIGWSTLAPDARSDTPLYLQLARNLAGAIHGGAWRAGEALPSERGLSAAAGVSRITARRALALLVEQGLIRRVRGAGSF
ITPRVADPLSRLVGFTAKMRQRGFAPDSVWLARSLRAASRDELARFGLSPGATVARLERLRRADGVVMAYERSTLPASCV
PEPQVLEGSLYGYLQSRGLDVVRASQRFRAVNASADVAQWLGLAPGAALLVITRIGYGADRRAIEATETYCRDDYYDFVA
ELKR

Sequences:

>Translated_244_residues
MDIGWSTLAPDARSDTPLYLQLARNLAGAIHGGAWRAGEALPSERGLSAAAGVSRITARRALALLVEQGLIRRVRGAGSF
ITPRVADPLSRLVGFTAKMRQRGFAPDSVWLARSLRAASRDELARFGLSPGATVARLERLRRADGVVMAYERSTLPASCV
PEPQVLEGSLYGYLQSRGLDVVRASQRFRAVNASADVAQWLGLAPGAALLVITRIGYGADRRAIEATETYCRDDYYDFVA
ELKR
>Mature_244_residues
MDIGWSTLAPDARSDTPLYLQLARNLAGAIHGGAWRAGEALPSERGLSAAAGVSRITARRALALLVEQGLIRRVRGAGSF
ITPRVADPLSRLVGFTAKMRQRGFAPDSVWLARSLRAASRDELARFGLSPGATVARLERLRRADGVVMAYERSTLPASCV
PEPQVLEGSLYGYLQSRGLDVVRASQRFRAVNASADVAQWLGLAPGAALLVITRIGYGADRRAIEATETYCRDDYYDFVA
ELKR

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=230, Percent_Identity=31.304347826087, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1786950, Length=226, Percent_Identity=27.4336283185841, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082252, Length=241, Percent_Identity=26.5560165975104, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1790540, Length=212, Percent_Identity=29.7169811320755, Blast_Score=74, Evalue=8e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26444; Mature: 26444

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIGWSTLAPDARSDTPLYLQLARNLAGAIHGGAWRAGEALPSERGLSAAAGVSRITARR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ALALLVEQGLIRRVRGAGSFITPRVADPLSRLVGFTAKMRQRGFAPDSVWLARSLRAASR
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCH
DELARFGLSPGATVARLERLRRADGVVMAYERSTLPASCVPEPQVLEGSLYGYLQSRGLD
HHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCH
VVRASQRFRAVNASADVAQWLGLAPGAALLVITRIGYGADRRAIEATETYCRDDYYDFVA
HHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ELKR
HHCC
>Mature Secondary Structure
MDIGWSTLAPDARSDTPLYLQLARNLAGAIHGGAWRAGEALPSERGLSAAAGVSRITARR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ALALLVEQGLIRRVRGAGSFITPRVADPLSRLVGFTAKMRQRGFAPDSVWLARSLRAASR
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCH
DELARFGLSPGATVARLERLRRADGVVMAYERSTLPASCVPEPQVLEGSLYGYLQSRGLD
HHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCH
VVRASQRFRAVNASADVAQWLGLAPGAALLVITRIGYGADRRAIEATETYCRDDYYDFVA
HHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ELKR
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]