| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is yusP [H]
Identifier: 126454616
GI number: 126454616
Start: 642836
End: 644431
Strand: Direct
Name: yusP [H]
Synonym: BURPS1106A_0669
Alternate gene names: 126454616
Gene position: 642836-644431 (Clockwise)
Preceding gene: 126452468
Following gene: 126453518
Centisome position: 16.12
GC content: 69.49
Gene sequence:
>1596_bases ATGGCTGTCCATACCGCCGCCCACCATTCGAGCGGGCAAGTCCTTCCGTTTCGCGAGTCGCTGCTCGCGATGCTCGGCAT CTCCTTCGTCACGATGCTCGTCGCGCTCGACCAGACCGTCGTCGGCACCGCGCTGCCGACGATCGTCGCCGAGCTGCGCG GCTTCGATCTGTACGCGTGGGTCGCCACGTCGTACCTGCTCGCGTCGGTGATCACCGTGCCGATCTTCGGGCGGCTCGGC GATTACTACGGGCGCAAGCCGTTCGTGATCGCGTCGCTCGTCGTGTTCACGGGCGCGTCGGTGCTGTGCGCGATGGCGCA GGACATGCTGTCGCTCGTGCTCGCGCGCGGCTTGCAGGGGATCGGCGGCGGGATGCTCGTCGGCACCGCGTTCGCGTGCA TTCCGGATCTCTTCCCCGATTCGGTCGTGCGGCTGCGCTGGCAGGTGCTGATGAGCTCGGCGTTCGGGATCGCGAACGCG GTCGGCCCGTCGCTCGGCGGCGTGCTCACGCAGAATTACGGCTGGCGCGCGGTGTTCTACGTGAATCTGCCGGTGGGCCT GCTGTCGATCTTCTTCGTCTGGCGCTATCTGCCGCACATGCGGCACGTCGAGCACACGCGGAAGATGCGGCTCGACTGGC CGGGCGCGCTCCTCATCGCCGTGACGCTCGGCGCGATGCAGCTGTTCGTCGAATGGCTGCCGAAATACGGAATCGGCGGC TGGCCGACGCTGCTGCTCGTCGCCGCGCTCGCGGGCGGCGTCGCGCTGTGGCGCTGGGAGAAGCGCTGCGCGCAGCCGAT CCTGCCGTTCGACATGTTCTCGAACCGCGCGCTGTCCACGCTGTTCATCCTCGCGATCCTCGCCGGCTTCGCGATGTTCT CGCTGCTCTTCTACGCGCCGCTGCTGTTCCAGGGCGGCTTCGGGATGTCGCCGCAGCAGGCGGGCGTCGTCATCACGCCG CTCGTCGTGTTCATCACGATCGGCAGCATCATGAACGGCCGCGTGATCACGCGGATCCGCCGTCCGAACGCGATGCTGTA CGTCGGCTTCCTGCTGTTCGCGCTCGCGTGCGCGGGCGTCGTCGCGTCGACGCATGCGACGCCGGGCTGGGCGCTGATGG CGCTGATGGTCGCGGGCGGCGTGGGCCTCGGCTTCGTGCTGCCGAACCTGACCGTGTTCGCGCAGCAGACGGCGGGCCGC GAGCATCTCGGGATCGCGACCGCGCTGCTGCAGTCGCTGCGCATGGTGGGCGGCATGCTCGGCACGGCACTCACCGGCAC GCTCGTCAATCAGCTCTACGCGAACGGCGTGCGCGACGCGCTCGCCGCGGACGGCGCGTTGCGCTGGCAGGCACGCCTTG CCGATCCTCAGGTGCTGATCGACCGCGCCGCGCAGTCGCGCGTGGTGGACGAACTCGTGCGCGCCGGGCATCATGGCGCC CATTTGCTCGAAGCGGCGCGCGAATCGCTCGTCGGCGCGATCCATATCGGCATCGGCGTCGGCGCGTTCGTCGCGCTCGC GGCGGTGTGGCAAAGCCGCTGCGTGCCGCCCGTCGAGCTGCGCCGCAAGCTCGAGCCGGCCGTCCTCGCCGAGTGA
Upstream 100 bases:
>100_bases CCTTCGCGACGCGCGCGTCGCATGGTGGCGCCGGCTAGATTACCTGATGCATGATAGAATTTTCGATTCGTTGACGCATC AAAAGTTGCACGAACAAAAG
Downstream 100 bases:
>100_bases GCGCCGTCTCGTCCCCTCATTCACGCATATCGGAGCCGAAGCCAGCGCATGGAAGAACAGGACCGCATCGCGATCTTGCA GCAGTTCGGGCGCACGTACC
Product: putative multidrug transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 531; Mature: 530
Protein sequence:
>531_residues MAVHTAAHHSSGQVLPFRESLLAMLGISFVTMLVALDQTVVGTALPTIVAELRGFDLYAWVATSYLLASVITVPIFGRLG DYYGRKPFVIASLVVFTGASVLCAMAQDMLSLVLARGLQGIGGGMLVGTAFACIPDLFPDSVVRLRWQVLMSSAFGIANA VGPSLGGVLTQNYGWRAVFYVNLPVGLLSIFFVWRYLPHMRHVEHTRKMRLDWPGALLIAVTLGAMQLFVEWLPKYGIGG WPTLLLVAALAGGVALWRWEKRCAQPILPFDMFSNRALSTLFILAILAGFAMFSLLFYAPLLFQGGFGMSPQQAGVVITP LVVFITIGSIMNGRVITRIRRPNAMLYVGFLLFALACAGVVASTHATPGWALMALMVAGGVGLGFVLPNLTVFAQQTAGR EHLGIATALLQSLRMVGGMLGTALTGTLVNQLYANGVRDALAADGALRWQARLADPQVLIDRAAQSRVVDELVRAGHHGA HLLEAARESLVGAIHIGIGVGAFVALAAVWQSRCVPPVELRRKLEPAVLAE
Sequences:
>Translated_531_residues MAVHTAAHHSSGQVLPFRESLLAMLGISFVTMLVALDQTVVGTALPTIVAELRGFDLYAWVATSYLLASVITVPIFGRLG DYYGRKPFVIASLVVFTGASVLCAMAQDMLSLVLARGLQGIGGGMLVGTAFACIPDLFPDSVVRLRWQVLMSSAFGIANA VGPSLGGVLTQNYGWRAVFYVNLPVGLLSIFFVWRYLPHMRHVEHTRKMRLDWPGALLIAVTLGAMQLFVEWLPKYGIGG WPTLLLVAALAGGVALWRWEKRCAQPILPFDMFSNRALSTLFILAILAGFAMFSLLFYAPLLFQGGFGMSPQQAGVVITP LVVFITIGSIMNGRVITRIRRPNAMLYVGFLLFALACAGVVASTHATPGWALMALMVAGGVGLGFVLPNLTVFAQQTAGR EHLGIATALLQSLRMVGGMLGTALTGTLVNQLYANGVRDALAADGALRWQARLADPQVLIDRAAQSRVVDELVRAGHHGA HLLEAARESLVGAIHIGIGVGAFVALAAVWQSRCVPPVELRRKLEPAVLAE >Mature_530_residues AVHTAAHHSSGQVLPFRESLLAMLGISFVTMLVALDQTVVGTALPTIVAELRGFDLYAWVATSYLLASVITVPIFGRLGD YYGRKPFVIASLVVFTGASVLCAMAQDMLSLVLARGLQGIGGGMLVGTAFACIPDLFPDSVVRLRWQVLMSSAFGIANAV GPSLGGVLTQNYGWRAVFYVNLPVGLLSIFFVWRYLPHMRHVEHTRKMRLDWPGALLIAVTLGAMQLFVEWLPKYGIGGW PTLLLVAALAGGVALWRWEKRCAQPILPFDMFSNRALSTLFILAILAGFAMFSLLFYAPLLFQGGFGMSPQQAGVVITPL VVFITIGSIMNGRVITRIRRPNAMLYVGFLLFALACAGVVASTHATPGWALMALMVAGGVGLGFVLPNLTVFAQQTAGRE HLGIATALLQSLRMVGGMLGTALTGTLVNQLYANGVRDALAADGALRWQARLADPQVLIDRAAQSRVVDELVRAGHHGAH LLEAARESLVGAIHIGIGVGAFVALAAVWQSRCVPPVELRRKLEPAVLAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. EmrB family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=437, Percent_Identity=27.9176201372998, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI1790195, Length=310, Percent_Identity=27.741935483871, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1789042, Length=417, Percent_Identity=25.6594724220624, Blast_Score=99, Evalue=1e-21, Organism=Escherichia coli, GI1788710, Length=414, Percent_Identity=25.1207729468599, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1788392, Length=324, Percent_Identity=28.0864197530864, Blast_Score=82, Evalue=7e-17, Organism=Escherichia coli, GI1790146, Length=170, Percent_Identity=30.5882352941176, Blast_Score=64, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6319770, Length=399, Percent_Identity=24.0601503759398, Blast_Score=100, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6323735, Length=326, Percent_Identity=24.5398773006135, Blast_Score=96, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6322958, Length=493, Percent_Identity=22.5152129817444, Blast_Score=85, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6325455, Length=154, Percent_Identity=31.1688311688312, Blast_Score=77, Evalue=8e-15, Organism=Saccharomyces cerevisiae, GI6321663, Length=183, Percent_Identity=30.0546448087432, Blast_Score=76, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004638 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 56863; Mature: 56732
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVHTAAHHSSGQVLPFRESLLAMLGISFVTMLVALDQTVVGTALPTIVAELRGFDLYAW CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH VATSYLLASVITVPIFGRLGDYYGRKPFVIASLVVFTGASVLCAMAQDMLSLVLARGLQG HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC IGGGMLVGTAFACIPDLFPDSVVRLRWQVLMSSAFGIANAVGPSLGGVLTQNYGWRAVFY CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHCCCCCCEEEEE VNLPVGLLSIFFVWRYLPHMRHVEHTRKMRLDWPGALLIAVTLGAMQLFVEWLPKYGIGG EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC WPTLLLVAALAGGVALWRWEKRCAQPILPFDMFSNRALSTLFILAILAGFAMFSLLFYAP HHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH LLFQGGFGMSPQQAGVVITPLVVFITIGSIMNGRVITRIRRPNAMLYVGFLLFALACAGV HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHEEEEECCCHHHHHHHHHHHHHHHHH VASTHATPGWALMALMVAGGVGLGFVLPNLTVFAQQTAGREHLGIATALLQSLRMVGGML HHHCCCCCHHHHHHHHHHCCCHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH GTALTGTLVNQLYANGVRDALAADGALRWQARLADPQVLIDRAAQSRVVDELVRAGHHGA HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHH HLLEAARESLVGAIHIGIGVGAFVALAAVWQSRCVPPVELRRKLEPAVLAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHCCC >Mature Secondary Structure AVHTAAHHSSGQVLPFRESLLAMLGISFVTMLVALDQTVVGTALPTIVAELRGFDLYAW CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH VATSYLLASVITVPIFGRLGDYYGRKPFVIASLVVFTGASVLCAMAQDMLSLVLARGLQG HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC IGGGMLVGTAFACIPDLFPDSVVRLRWQVLMSSAFGIANAVGPSLGGVLTQNYGWRAVFY CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHCCCCCCEEEEE VNLPVGLLSIFFVWRYLPHMRHVEHTRKMRLDWPGALLIAVTLGAMQLFVEWLPKYGIGG EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC WPTLLLVAALAGGVALWRWEKRCAQPILPFDMFSNRALSTLFILAILAGFAMFSLLFYAP HHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH LLFQGGFGMSPQQAGVVITPLVVFITIGSIMNGRVITRIRRPNAMLYVGFLLFALACAGV HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHEEEEECCCHHHHHHHHHHHHHHHHH VASTHATPGWALMALMVAGGVGLGFVLPNLTVFAQQTAGREHLGIATALLQSLRMVGGML HHHCCCCCHHHHHHHHHHCCCHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH GTALTGTLVNQLYANGVRDALAADGALRWQARLADPQVLIDRAAQSRVVDELVRAGHHGA HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHH HLLEAARESLVGAIHIGIGVGAFVALAAVWQSRCVPPVELRRKLEPAVLAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]