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The map label for this gene is flhF [H]

Identifier: 126454275

GI number: 126454275

Start: 3827986

End: 3829737

Strand: Reverse

Name: flhF [H]

Synonym: BURPS1106A_3923

Alternate gene names: 126454275

Gene position: 3829737-3827986 (Counterclockwise)

Preceding gene: 126454729

Following gene: 126452975

Centisome position: 96.02

GC content: 71.58

Gene sequence:

>1752_bases
TTGAACATTCGCAAATTCATTGGTCCGACGAGCCGCGACGCGCTGCGCCTCGTACGCGAAGCGATGGGCGCCGACGCGGC
GGTACTGTCCAACCGGACGCTCGAAGACGGGCGCGTCGAGATCGTCGCGCTGCCCGCCGCCGAGCTCGCCGAAATCTCGA
CGCGCCGCGCGGCCGACGCCGCGCATGGCGCGGCCCAGCCGCATGCGCCGCGCCAGGGTGCGCAGCATGCGCCCTCGGGG
CCGTCGTTCGCGTCGCCCGCCGCATCGGTCGTCGTGCCGAGCGCCGCCTCCGGCGCATCGGCGCCGGCCTCGCGCGCCGC
CGCGAATCCGTACGCGGCGGGCGGCATGCCCGACGTGTTCTCGTCGGTGTTCGGCGCGAGTGTCGACGCGTCGGCCGACG
ACGATGCGCGGCCCGCCGTTTCGCCGCCCGTGCCGCCCGCGCTGCCGCTCGCCGCGCCGTCGGAGCCCGCGCCATGGCTC
GTCGAGCACGCGAAGCGGCTGACGAAGCAGCACGAAGAGCTCATCGCGCGGCCGCGCGCCACCGCCGCCCTGCCTGCGCA
GAACGCGCCGCAAGCGCCGCGCGAGCGCGCGAGCGCCGACGAGGCGCCCGAATGGGCGCGCGACATCGTGCGCAACGCCG
CGCGCCGGCTGCCGGCCGACGAGCCCGCGGCGGCGAAGCCGGCGCTGCGCCTGCCCGAGGATACGGCGGCCGCCGTCGCG
GACGCGGTGAAGGCGCGTATCGAGCGCATCGTCAACGATACGGTGATGCAGGAGCTCGGCTCGCTGCGCGAGCTGATGGA
AGAGCAGTTCGCGGGCCTGATGTGGAACGAGCGCCAGCGCCGCAACCCGGTGCACGGCGCGCTGACGAAATACCTGTTTG
CGGCGGGCTTCTCCGCGCAACTCGTGCGGATGATCGTCGACAACCTGCCGGAAGGCGAGGGCTACGACACGCTCGACGCG
GCGGCGGACTGGGCGCAGTCGGTGCTCGCGGCGAACCTGCCCGTGCTCGACAGCGAGGACGCGCTGATGGAGCGCGGCGG
CGTGTTCGCGCTGATGGGCCCCACGGGCGTGGGCAAGACGACGACGACCGCGAAGCTCGCGGCGCGCTGCGTGATGCGCT
TCGGCGCGAGCAAGGTCGCGCTGCTCACGACGGACAGCTACCGGATCGGCGGCCACGAGCAACTGCGCATCTTCGGCAAG
ATCCTCGGCGTGCCGGTGCACGCGGTGAAGGACGGCGGCGATCTGCAGCTCGCGCTCGCCGAGCTGCGCAACAAGCACAT
GGTGCTGATCGACACGATCGGCATGAGCCAGCGCGACCGCACGGTGTCCGACCAGATCGCGATGCTGCACGGCGCGGATA
CGCCGGTGCAGCGCCTGCTGCTGCTCAACGCGACGAGCCACGGCGACACGCTCAACGAAGTCGTGCAGGCGTACCGCAGC
GCGGCCGGCCAACCGAAGGCGGCGTTGCCGGATCTCGCCGGCTGCATCCTCACGAAGCTCGACGAGGCGAGCAACCTGGG
CGGCGTGCTCGACACGGTGATCCGCTACAAGCTGCCGGTGCATTACGTGTCGACCGGCCAGAAGGTGCCCGAGAACCTGT
ACGTCGCGACGAAGAAATTCCTGCTCAAGAGCGCGTTCTGCGCGCCGCGCGAGGATTCGCCGTTCGTGCCCCATGACGAT
GACCTGCCGGCGATGCTGTCCGCGTTGAGCACGCGCACCGGCAACGAACTGCACGAGGTCCGCTTTGGATAA

Upstream 100 bases:

>100_bases
GCTTCCTGCGCCGCAGCCTGCCGCAATTGAAAGTGCTGTCCTACGCCGAAGTGCCGGACACGCGCACGATCAAAGTCGTT
AACGTCATCGGGGGTACCGC

Downstream 100 bases:

>100_bases
GCGCATCACCGATCAGGCCGAAGGGCTGCGGCGCCTGCTCGCCGGACGCGCGTCGCGCGTCGTCGCGGTGACGGGCGGGC
CGTCGGGCGTCGGCTGCACG

Product: flagellar biosynthesis regulator FlhF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 583; Mature: 583

Protein sequence:

>583_residues
MNIRKFIGPTSRDALRLVREAMGADAAVLSNRTLEDGRVEIVALPAAELAEISTRRAADAAHGAAQPHAPRQGAQHAPSG
PSFASPAASVVVPSAASGASAPASRAAANPYAAGGMPDVFSSVFGASVDASADDDARPAVSPPVPPALPLAAPSEPAPWL
VEHAKRLTKQHEELIARPRATAALPAQNAPQAPRERASADEAPEWARDIVRNAARRLPADEPAAAKPALRLPEDTAAAVA
DAVKARIERIVNDTVMQELGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEGYDTLDA
AADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGK
ILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRS
AAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFCAPREDSPFVPHDD
DLPAMLSALSTRTGNELHEVRFG

Sequences:

>Translated_583_residues
MNIRKFIGPTSRDALRLVREAMGADAAVLSNRTLEDGRVEIVALPAAELAEISTRRAADAAHGAAQPHAPRQGAQHAPSG
PSFASPAASVVVPSAASGASAPASRAAANPYAAGGMPDVFSSVFGASVDASADDDARPAVSPPVPPALPLAAPSEPAPWL
VEHAKRLTKQHEELIARPRATAALPAQNAPQAPRERASADEAPEWARDIVRNAARRLPADEPAAAKPALRLPEDTAAAVA
DAVKARIERIVNDTVMQELGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEGYDTLDA
AADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGK
ILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRS
AAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFCAPREDSPFVPHDD
DLPAMLSALSTRTGNELHEVRFG
>Mature_583_residues
MNIRKFIGPTSRDALRLVREAMGADAAVLSNRTLEDGRVEIVALPAAELAEISTRRAADAAHGAAQPHAPRQGAQHAPSG
PSFASPAASVVVPSAASGASAPASRAAANPYAAGGMPDVFSSVFGASVDASADDDARPAVSPPVPPALPLAAPSEPAPWL
VEHAKRLTKQHEELIARPRATAALPAQNAPQAPRERASADEAPEWARDIVRNAARRLPADEPAAAKPALRLPEDTAAAVA
DAVKARIERIVNDTVMQELGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEGYDTLDA
AADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGK
ILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRS
AAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFCAPREDSPFVPHDD
DLPAMLSALSTRTGNELHEVRFG

Specific function: Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum [H]

COG id: COG1419

COG function: function code N; Flagellar GTP-binding protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Escherichia coli, GI1789874, Length=253, Percent_Identity=26.0869565217391, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR020006 [H]

Pfam domain/function: PF00448 SRP54 [H]

EC number: NA

Molecular weight: Translated: 61802; Mature: 61802

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRKFIGPTSRDALRLVREAMGADAAVLSNRTLEDGRVEIVALPAAELAEISTRRAADA
CCCHHHCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHHH
AHGAAQPHAPRQGAQHAPSGPSFASPAASVVVPSAASGASAPASRAAANPYAAGGMPDVF
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCHHHH
SSVFGASVDASADDDARPAVSPPVPPALPLAAPSEPAPWLVEHAKRLTKQHEELIARPRA
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
TAALPAQNAPQAPRERASADEAPEWARDIVRNAARRLPADEPAAAKPALRLPEDTAAAVA
CCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
DAVKARIERIVNDTVMQELGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHCCHHHH
LVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKT
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEECCCCCCCC
TTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA
HHHHHHHHHHHHHHCCCEEEEEEECCEECCCHHHHHHHHHHHCCCCEEECCCCCHHHHHH
ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRS
HHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
AAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKF
HCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHH
LLKSAFCAPREDSPFVPHDDDLPAMLSALSTRTGNELHEVRFG
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure
MNIRKFIGPTSRDALRLVREAMGADAAVLSNRTLEDGRVEIVALPAAELAEISTRRAADA
CCCHHHCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHHH
AHGAAQPHAPRQGAQHAPSGPSFASPAASVVVPSAASGASAPASRAAANPYAAGGMPDVF
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCHHHH
SSVFGASVDASADDDARPAVSPPVPPALPLAAPSEPAPWLVEHAKRLTKQHEELIARPRA
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
TAALPAQNAPQAPRERASADEAPEWARDIVRNAARRLPADEPAAAKPALRLPEDTAAAVA
CCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
DAVKARIERIVNDTVMQELGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHCCHHHH
LVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKT
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEECCCCCCCC
TTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA
HHHHHHHHHHHHHHCCCEEEEEEECCEECCCHHHHHHHHHHHCCCCEEECCCCCHHHHHH
ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRS
HHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
AAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKF
HCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHH
LLKSAFCAPREDSPFVPHDDDLPAMLSALSTRTGNELHEVRFG
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]