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The map label for this gene is cph2 [H]

Identifier: 126453370

GI number: 126453370

Start: 611783

End: 614146

Strand: Direct

Name: cph2 [H]

Synonym: BURPS1106A_0641

Alternate gene names: 126453370

Gene position: 611783-614146 (Clockwise)

Preceding gene: 126454252

Following gene: 126454998

Centisome position: 15.34

GC content: 73.05

Gene sequence:

>2364_bases
GTGCGTTCGGCCGTCGCGGTTGCACTGGCGGTTGCGTTGCTCGGCGCGGCGCTGCTGTCCGTCGAGCGGTTCGGCGCCGC
GCGAAGCCGCGCGTCGGCCGCGATCCCGGCGAGCATCGGCGCGCGCCTGAGCGGCTGCGCGTTCATCGCCGTGCGCATCG
GCGCGGCGCTGTCGCGGCGCGCGCCGTCGCCGGCGCATGCGGCGGCGCCTGGCGTTGCGCGGCCGGATTTCGACGCGATC
GAACGCGTGTTCGGCCCGATCCGCATGCGCGAGCGGCGCGCACATGGCGCGACGTGCACCGCGGACGCGCCGGACGCGTC
GCACGCAGGGTGGATCGAACCCGCGCGCGCGTGCTCGGCCGCCGCGCATGCGGCGCCGGGGCGCGGCGCCGAGGGCGCGC
CGAACACGATGCCGGGGCCGTCCGAAGCGGGCGCCGCGGCGGTCCCACAATCGCAACCGTACCTGGACATGATCGATTCG
ACGTTTCGCGAACCGGCGGCCATCGTGCTCGCTTTGAGCCTGCTCGGCATGATCGCGCTCGCACTGCTGCCCGTGTTCCG
GATCAGGCGGCTCGCGCTTCGCCTCGGCGAGGCGCAGGGAGCGCTCGAGATGAGCGAAGCGCGCGCCCGCGCGGCGCTCG
TCGCCGTCGGCGACGGCGTGATCTTCACCGGCCGGGCGGGGCGCGTCGAATGCCTGAATCCGGCGGCGGAGCGATTGATC
GGCATGCTCGCCGACGATTGCCGCGGCCGTCCGCTCGTGTCGACGCTGCGGCTGTCGCGCACGGCCACGTCCGCTTCGTC
CGGCGCGTTCGCCGCGTCCGCCGGGCTCGACGCGCCGGATTCGCCGGGCTCGGCCGCCTCGCCCGATGCGCCGCTCGGCG
ATCTCGAGGACGGCGGCAGTTGCGACGCGACGCTCTACCGCGCGGACGGCGGCGCGATCGCCGTGCGCGCGACCGCGTCG
TCGATCGCGCCGCCGCCGGGGCATGCGCGGCGCGCGTGCGGCAGCGGCCGCGTGCTCGTGCTCAAGAGCCTCGCGACCGA
GCACGAGCTCGTGCGCCGCCTCGCGTGGCAGACAACGCACGATCCGCTCACCGGCCTGGCGAGCCGCGCAGAGTTCGAGC
GTCACGTTGGTTTCGCGCTCGCCGCCGACGTGCGCGAGCCGGTCGCGCTGCTGTTCGTCGACCTGGATCGCTTCCGGATC
GTCAACGATACGTGCGGCTACGCGGCGGGCGACGCGATGCTCGCCGCGCTCGCCGCGCGTCTCGTGTCGTGCGCGGCGTC
GGCCGACGTCGTCGCGCGGCTCGGCGGCGACGAATTCTGCGTGCTGCTCGACGCCCGCGACGAAGCGTCGGCCGTGAGCG
CGGCCGAGCGCCTGCGCGCGAGCGTCGACGGCTTCGTGTTCGTCTGGGACGGCCAGCCGTTCTCGGTGACGGCGAGCGTC
GGCGTCGCGCTGCTCGGCGGGCCGGGCCGCGCGCCGCGCGTCGAGGATGCGGTGCGGCTCGCCGGCATCGCGTGCGACGT
CGCGAAGGCGCGCGGGCGCAACCGCGTGCAACTGGCCGATCCGCACGATCACGAGCTCGCGCACCACATCAGCGACGTAT
CGTGGTGCGCGCGCGTGAGGCAGGCGCTCGAATACGACGATTTCCGCCTGTACGTGCAGCCGATCGTCGATACGGCGACG
CAGGGTGCGACGGGCCTGCCGCGCGCGAGGCGCGGCGAGCTGCTGCTGCGCATGGGCGCGCTCGGCGAGCGCGAGGGCGT
CGCGCCGCCCGGCCTTTTCATCCGCGCGGCCGAGCGCTACGGGCTCGTCACCGACATCGACCGCTGGGTCGTGCGCACGG
TGCTCGACGCGCTCGCTCGCACGCGCAGCCGGCGCTTCAGCGAATACGCGATCAATCTGTCGGGGATCTCGATCGGCGAC
GAGCGCTTTCTCGACTATGTGCTCGAACAGTTCGCGCGCACGCGCGTCGCGCCCGCGCTCATCTGTTTCGAGATCACCGA
GACGGCGGCGATCGCGAACCTGGCCGGCGCGCTGCGCTTCATGCACGAGCTGAAGGCGCTCGGCTGCCGGTTCGCGCTCG
ACGATTTCGGCTCCGGGATGGCGTCGCTCAGCTATCTGAAGCAACTGCCCGTCGAGTACCTGAAGATCGACGGCAGCTTC
GTGACGGGCATCGCGAACGATGCCGCGAGCCTCGACATCGTCGCGTCGATCAACGACATCGGCCACGCGATGAATTGCAA
GACGATTGCCGAGTACGTCGACAGCGCGGCGACGCTGCAAAAGCTCGCCGCACTCGGCGTCGATTATGCGCAGGGCTACT
ACATCGGCCGGCCCGTGCCGTGGTGCGAGGCCGCGCGCGCGTAG

Upstream 100 bases:

>100_bases
GTGCTCGAAATGTTCGCGGCTTGTCGCTTTCGGTGATGTATCGATGGCTTCCGTCCCCAGTGGTCCGTCTTGCGATGCGA
ACGCGCGATGCGCCCGGTTC

Downstream 100 bases:

>100_bases
CGGCGCGCCCGGCGCGGCGGGCGGCGAGCGTGCGCCGACGGGCGGCGGCGAGCGGCCGGCGGCAACGGCCGGCGCGAGAG
CGACCGTCAATAGCGATCGT

Product: diguanylate cyclase/cyclic diguanylate phosphodiesterase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 787; Mature: 787

Protein sequence:

>787_residues
MRSAVAVALAVALLGAALLSVERFGAARSRASAAIPASIGARLSGCAFIAVRIGAALSRRAPSPAHAAAPGVARPDFDAI
ERVFGPIRMRERRAHGATCTADAPDASHAGWIEPARACSAAAHAAPGRGAEGAPNTMPGPSEAGAAAVPQSQPYLDMIDS
TFREPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIFTGRAGRVECLNPAAERLI
GMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSPGSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATAS
SIAPPPGHARRACGSGRVLVLKSLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREPVALLFVDLDRFRI
VNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLLDARDEASAVSAAERLRASVDGFVFVWDGQPFSVTASV
GVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQLADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTAT
QGATGLPRARRGELLLRMGALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSEYAINLSGISIGD
ERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGSF
VTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPVPWCEAARA

Sequences:

>Translated_787_residues
MRSAVAVALAVALLGAALLSVERFGAARSRASAAIPASIGARLSGCAFIAVRIGAALSRRAPSPAHAAAPGVARPDFDAI
ERVFGPIRMRERRAHGATCTADAPDASHAGWIEPARACSAAAHAAPGRGAEGAPNTMPGPSEAGAAAVPQSQPYLDMIDS
TFREPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIFTGRAGRVECLNPAAERLI
GMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSPGSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATAS
SIAPPPGHARRACGSGRVLVLKSLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREPVALLFVDLDRFRI
VNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLLDARDEASAVSAAERLRASVDGFVFVWDGQPFSVTASV
GVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQLADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTAT
QGATGLPRARRGELLLRMGALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSEYAINLSGISIGD
ERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGSF
VTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPVPWCEAARA
>Mature_787_residues
MRSAVAVALAVALLGAALLSVERFGAARSRASAAIPASIGARLSGCAFIAVRIGAALSRRAPSPAHAAAPGVARPDFDAI
ERVFGPIRMRERRAHGATCTADAPDASHAGWIEPARACSAAAHAAPGRGAEGAPNTMPGPSEAGAAAVPQSQPYLDMIDS
TFREPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIFTGRAGRVECLNPAAERLI
GMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSPGSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATAS
SIAPPPGHARRACGSGRVLVLKSLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREPVALLFVDLDRFRI
VNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLLDARDEASAVSAAERLRASVDGFVFVWDGQPFSVTASV
GVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQLADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTAT
QGATGLPRARRGELLLRMGALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSEYAINLSGISIGD
ERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGSF
VTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPVPWCEAARA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1788381, Length=590, Percent_Identity=26.9491525423729, Blast_Score=176, Evalue=7e-45,
Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=29.5081967213115, Blast_Score=168, Evalue=1e-42,
Organism=Escherichia coli, GI1788849, Length=358, Percent_Identity=31.5642458100559, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI87081921, Length=491, Percent_Identity=25.4582484725051, Blast_Score=146, Evalue=6e-36,
Organism=Escherichia coli, GI226510982, Length=451, Percent_Identity=25.7206208425721, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI87082096, Length=246, Percent_Identity=32.1138211382114, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=32.3886639676113, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI87081980, Length=253, Percent_Identity=28.4584980237154, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1788502, Length=252, Percent_Identity=26.984126984127, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=33.7423312883436, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=28.6885245901639, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=34.4444444444444, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI87081845, Length=210, Percent_Identity=30, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1787055, Length=264, Percent_Identity=28.030303030303, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI87082007, Length=170, Percent_Identity=35.2941176470588, Blast_Score=83, Evalue=8e-17,
Organism=Escherichia coli, GI1788956, Length=139, Percent_Identity=35.2517985611511, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=26.9387755102041, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI87081977, Length=128, Percent_Identity=34.375, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=30.8571428571429, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=31.9277108433735, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI1787802, Length=184, Percent_Identity=27.1739130434783, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1787816, Length=177, Percent_Identity=29.3785310734463, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1788085, Length=195, Percent_Identity=27.6923076923077, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 82489; Mature: 82489

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSAVAVALAVALLGAALLSVERFGAARSRASAAIPASIGARLSGCAFIAVRIGAALSRR
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHC
APSPAHAAAPGVARPDFDAIERVFGPIRMRERRAHGATCTADAPDASHAGWIEPARACSA
CCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHH
AAHAAPGRGAEGAPNTMPGPSEAGAAAVPQSQPYLDMIDSTFREPAAIVLALSLLGMIAL
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
ALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIFTGRAGRVECLNPAAERLI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEEEECCCEEEECCCCCCEECCHHHHHHH
GMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSPGSAASPDAPLGDLEDGGS
HHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
CDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLKSLATEHELVRRLAWQTTH
CCEEEEEECCCEEEEEECCCCCCCCCCHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC
DPLTGLASRAEFERHVGFALAADVREPVALLFVDLDRFRIVNDTCGYAAGDAMLAALAAR
CHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEEHHHHEEECCCCCCCHHHHHHHHHHHH
LVSCAASADVVARLGGDEFCVLLDARDEASAVSAAERLRASVDGFVFVWDGQPFSVTASV
HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEC
GVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQLADPHDHELAHHISDVSWCARVR
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
QALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRMGALGEREGVAPPGLFIRAAERY
HHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCEEEEHHHC
GLVTDIDRWVVRTVLDALARTRSRRFSEYAINLSGISIGDERFLDYVLEQFARTRVAPAL
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCHHHHHHHHHHHHHHHHHCHHH
ICFEITETAAIANLAGALRFMHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGSF
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHEEECCCE
VTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPVP
EECCCCCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCEECCCCCC
WCEAARA
HHHCCCC
>Mature Secondary Structure
MRSAVAVALAVALLGAALLSVERFGAARSRASAAIPASIGARLSGCAFIAVRIGAALSRR
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHC
APSPAHAAAPGVARPDFDAIERVFGPIRMRERRAHGATCTADAPDASHAGWIEPARACSA
CCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHH
AAHAAPGRGAEGAPNTMPGPSEAGAAAVPQSQPYLDMIDSTFREPAAIVLALSLLGMIAL
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
ALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIFTGRAGRVECLNPAAERLI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEEEECCCEEEECCCCCCEECCHHHHHHH
GMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSPGSAASPDAPLGDLEDGGS
HHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
CDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLKSLATEHELVRRLAWQTTH
CCEEEEEECCCEEEEEECCCCCCCCCCHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC
DPLTGLASRAEFERHVGFALAADVREPVALLFVDLDRFRIVNDTCGYAAGDAMLAALAAR
CHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEEHHHHEEECCCCCCCHHHHHHHHHHHH
LVSCAASADVVARLGGDEFCVLLDARDEASAVSAAERLRASVDGFVFVWDGQPFSVTASV
HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEC
GVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQLADPHDHELAHHISDVSWCARVR
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
QALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRMGALGEREGVAPPGLFIRAAERY
HHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCEEEEHHHC
GLVTDIDRWVVRTVLDALARTRSRRFSEYAINLSGISIGDERFLDYVLEQFARTRVAPAL
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCHHHHHHHHHHHHHHHHHCHHH
ICFEITETAAIANLAGALRFMHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGSF
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHEEECCCE
VTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPVP
EECCCCCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCEECCCCCC
WCEAARA
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]