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The map label for this gene is cobD [H]

Identifier: 126453201

GI number: 126453201

Start: 2857970

End: 2858959

Strand: Reverse

Name: cobD [H]

Synonym: BURPS1106A_2912

Alternate gene names: 126453201

Gene position: 2858959-2857970 (Counterclockwise)

Preceding gene: 126453578

Following gene: 126451823

Centisome position: 71.68

GC content: 65.45

Gene sequence:

>990_bases
GTGCTATCTTTACGCGAAAAATCAATCATCCAGAACGGCACGGCCCTTCGCATGACTTTCTTCTCGGTTCTCCTTGCCCT
CATCATCGAACAGGTCCGCGCGCTGTCGCCGAGCAATCCGGTCTTCGCGCTGTTTCAGTCTCATGCGGAATCGGCTGCGC
ACGGCTTCGACGCCGGCAAAAAGAAGCACGGCGTGCTCGCGTGGCTCGTCGTCGTGCTGCCTTGGGTGCTGGCCGTCGGG
CTCGTCTATTTCCTGCTGTACAAGGTGAGCTTCGTGCTCGCGTTCCTCTGGAACGTCGTCGTCGTGTACTTCACGCTCGG
CTTCAGGCAGTTCAGCCATTACTTCACCGATATCCACCTCGCGCTCAACAACGACGACGTGCCGCGCGCGCGCGACATCC
TGCGCGAATGGACGGGCATCGACACGGTTGACATGCCGGTCGGCGAAATCGTCCGCCACACGCTGATTCATGCGGTCGTC
GCCTCGCACCGCCACGTGTTCGGCGTGTTTTTCTGGTTCGTCCTGCCGGTCGGCCCGGCGGGCGCGGTGCTGTACCGGAT
CGCCGAATATCTGTCGCGCAGCTGGTCGGTGCCGGCGGACGATCGCACCGCGGCGTTCTCGACGTTCGCGCAGCGCGCGT
TCTTCGTGATCGACTGGGTGCCGGCGCGCCTGACCGCGCTCGGCTTCGCGATCGTCGGCAATTTCGAGGACGCGATCTAT
GCGTGGCGCAATCATACGCGCCAGTGGCCCGACCCGAACGACGGCGTGCTGCTCGCTGCCGGCAGCGGCGCGCTCGGCGC
ACGGCTCGCGGGCCCGCTCGCTGAGCCGTCGAGCGTCGATGCGCTCGCGTCGGGCGACAGCGGCCCGCTCACGGTCGGCG
ACGACTGCACGCCGCGCACGCTGCAATCGGCCGTCGGCCTCGTGTGGCGCGCGGTGATTCTATGGATGCTGCTCCTGCTG
ATGCTGACGATCGCCGTTTGGGTGTCGTGA

Upstream 100 bases:

>100_bases
GGCGCGACGGCCGGCATGCTGCGCAACCTGTATCGCTTTCTGTCGGCCTAATGGCGCGCGCCACAGTCGGTGCACGCCGG
AGCCATCCGCTGCGCCCGCT

Downstream 100 bases:

>100_bases
CGCCAAGCGGGAAGGCGCGCGCCTTGACGCGCCGAGGCTCGCCCCGAACCAGCCGGCTGCGCGCCGGCTTTTTTTGCGGC
GGTTTGCGGCGCGCCGAGAC

Product: CobD/CbiB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MLSLREKSIIQNGTALRMTFFSVLLALIIEQVRALSPSNPVFALFQSHAESAAHGFDAGKKKHGVLAWLVVVLPWVLAVG
LVYFLLYKVSFVLAFLWNVVVVYFTLGFRQFSHYFTDIHLALNNDDVPRARDILREWTGIDTVDMPVGEIVRHTLIHAVV
ASHRHVFGVFFWFVLPVGPAGAVLYRIAEYLSRSWSVPADDRTAAFSTFAQRAFFVIDWVPARLTALGFAIVGNFEDAIY
AWRNHTRQWPDPNDGVLLAAGSGALGARLAGPLAEPSSVDALASGDSGPLTVGDDCTPRTLQSAVGLVWRAVILWMLLLL
MLTIAVWVS

Sequences:

>Translated_329_residues
MLSLREKSIIQNGTALRMTFFSVLLALIIEQVRALSPSNPVFALFQSHAESAAHGFDAGKKKHGVLAWLVVVLPWVLAVG
LVYFLLYKVSFVLAFLWNVVVVYFTLGFRQFSHYFTDIHLALNNDDVPRARDILREWTGIDTVDMPVGEIVRHTLIHAVV
ASHRHVFGVFFWFVLPVGPAGAVLYRIAEYLSRSWSVPADDRTAAFSTFAQRAFFVIDWVPARLTALGFAIVGNFEDAIY
AWRNHTRQWPDPNDGVLLAAGSGALGARLAGPLAEPSSVDALASGDSGPLTVGDDCTPRTLQSAVGLVWRAVILWMLLLL
MLTIAVWVS
>Mature_329_residues
MLSLREKSIIQNGTALRMTFFSVLLALIIEQVRALSPSNPVFALFQSHAESAAHGFDAGKKKHGVLAWLVVVLPWVLAVG
LVYFLLYKVSFVLAFLWNVVVVYFTLGFRQFSHYFTDIHLALNNDDVPRARDILREWTGIDTVDMPVGEIVRHTLIHAVV
ASHRHVFGVFFWFVLPVGPAGAVLYRIAEYLSRSWSVPADDRTAAFSTFAQRAFFVIDWVPARLTALGFAIVGNFEDAIY
AWRNHTRQWPDPNDGVLLAAGSGALGARLAGPLAEPSSVDALASGDSGPLTVGDDCTPRTLQSAVGLVWRAVILWMLLLL
MLTIAVWVS

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: NA

Molecular weight: Translated: 36317; Mature: 36317

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA