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The map label for this gene is orn [H]

Identifier: 126451823

GI number: 126451823

Start: 2854493

End: 2855098

Strand: Reverse

Name: orn [H]

Synonym: BURPS1106A_2908

Alternate gene names: 126451823

Gene position: 2855098-2854493 (Counterclockwise)

Preceding gene: 126453201

Following gene: 126453552

Centisome position: 71.58

GC content: 65.02

Gene sequence:

>606_bases
ATGACCGATATCTCCGCCGTGGCCGGCCAGCCCGCGCTCGTTCGCAACGAACTGAACCTCGTTTGGCTCGACATGGAAAT
GACGGGCCTGGACCCGGACACCGACCGCATCATCGAGATCGCCGTCGTCGTCACCAATTCGACCCTCGACATCGCGGTCG
AGGGGCCGGTGCTCGCGATCCATCAGAGCGACGAGACGCTTGCGAAGATGGACGACTGGAACAAGAACACCCATGGCCGC
TCGGGCCTCATCGACCGCGTGCGCGCGTCGAGCGTCACCGAGGCGGACGCCGCCGCGCAGATCGCGGCGTTTCTCGCCCG
GCACGTGCCGCCCGGCAAGTCGCCGATGTGCGGAAATTCGATCTGCCAGGACCGCCGCTTCATGGCGCGCTGGATGCCCG
AGCTCGAACGCTTCTTTCATTACCGCAACCTCGACGTGAGCACGCTCAAGGAGCTGTGCCGGCGCTGGCAGCCCGCGATC
TACAAGGGTTTCCAGAAGCGCGCGATGCATACCGCGCTCGCCGATATCCACGAGTCGATCGACGAGCTCAAGTATTACCG
CGAGCGTTTTCTGATTCCGGCCGCGCCGGCGGGCGAGACCGCGTAA

Upstream 100 bases:

>100_bases
TCTATGCGAGAATTATATGTTCTTGCGGACCCGGCCCGCTTGTTGTTTGCCGGCCCGCCCGGCGGCGCGCGCGCCGTCCG
CCCATTTCCCAGGATTGCTC

Downstream 100 bases:

>100_bases
GCGGACGGCGCGCGCCGCGCGGCTTGGCGCGCTCGGGCGCGCACGCGTGCGTGTGCCCGCGTCGTCACGCGGTACGCCGG
CGGGGCGGCCGCCGGCGTGC

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MTDISAVAGQPALVRNELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGR
SGLIDRVRASSVTEADAAAQIAAFLARHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAI
YKGFQKRAMHTALADIHESIDELKYYRERFLIPAAPAGETA

Sequences:

>Translated_201_residues
MTDISAVAGQPALVRNELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGR
SGLIDRVRASSVTEADAAAQIAAFLARHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAI
YKGFQKRAMHTALADIHESIDELKYYRERFLIPAAPAGETA
>Mature_200_residues
TDISAVAGQPALVRNELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRS
GLIDRVRASSVTEADAAAQIAAFLARHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIY
KGFQKRAMHTALADIHESIDELKYYRERFLIPAAPAGETA

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=169, Percent_Identity=48.5207100591716, Blast_Score=177, Evalue=7e-45,
Organism=Escherichia coli, GI87082382, Length=176, Percent_Identity=60.7954545454545, Blast_Score=235, Evalue=2e-63,
Organism=Caenorhabditis elegans, GI17557752, Length=182, Percent_Identity=44.5054945054945, Blast_Score=169, Evalue=1e-42,
Organism=Saccharomyces cerevisiae, GI6323088, Length=208, Percent_Identity=36.0576923076923, Blast_Score=121, Evalue=8e-29,
Organism=Drosophila melanogaster, GI21355135, Length=170, Percent_Identity=41.7647058823529, Blast_Score=158, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 22607; Mature: 22476

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDISAVAGQPALVRNELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAI
CCCCCCCCCCCCEEECCCCEEEEEEEECCCCCCCHHEEEEEEEEECCEEEEEECCCEEEE
HQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLARHVPPGKSPMCGNS
ECCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH
ICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
DELKYYRERFLIPAAPAGETA
HHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TDISAVAGQPALVRNELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAI
CCCCCCCCCCCEEECCCCEEEEEEEECCCCCCCHHEEEEEEEEECCEEEEEECCCEEEE
HQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLARHVPPGKSPMCGNS
ECCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH
ICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
DELKYYRERFLIPAAPAGETA
HHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA