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The map label for this gene is sotB [H]

Identifier: 126453044

GI number: 126453044

Start: 868206

End: 869417

Strand: Direct

Name: sotB [H]

Synonym: BURPS1106A_0885

Alternate gene names: 126453044

Gene position: 868206-869417 (Clockwise)

Preceding gene: 126452693

Following gene: 126452093

Centisome position: 21.77

GC content: 76.16

Gene sequence:

>1212_bases
ATGAGCGATTGCACGACGCGGCCCGCCGGCTTCGCGCGGCCGTCGCGCGAAGCCGCGCGCCTGCCGCTCGCGGGATTGCT
CGCGCTCGCGACGGCCGGCTTCATCACGATCGTGACCGAGGCGCTGCCCGCCGGGCTGCTGCCGCTGATGGGGCGCGACC
TGCGCGTGTCCGATGCGCTCGTCGGCCAGCTCGTCACAGTCTATGCGGCGGGCTCGATCGTCGCGGCGATGCCGCTCGTC
GCGGCGACGCGCGGCATGCGCAGGCGGCCGCTGCTGCTCGCCGCGCTCGCGGGCTTCGTCGTCGCGAACACGGCGACGGC
CGCGTCGCCGTACTACGCGCCCGTGCTCGTCGCGCGCTGCGTCGCGGGCGTCTCGGCGGGGCTCCTGTGGGCGCTGCTCG
CGGGCTACGCGAGCCGGATGGTCGACGCGCGGCAGCGCGGCCGCGCGATCGCGATCGCGATGCTCGGCGCGCCGGTGGCG
ATGTCGGTCGGCATTCCGCTCGGCACGGCGCTCGGCGCCGCGCTCGGCTGGCGCGCGACGTTCGCCGGCGTGACGGCGCT
CACGCTCGCGCTGATCGCGTGGGTGCGCGCGAGCCTGCCCGATGCGCCGGGGCGGCCCTCGGGCGAGCGGCTGCCGGTCG
CCCGCGTGCTGCGGATGCCGGGCGTGCTGCCCGTGCTGGCGGTGATGTTCGCGTACGTGCTCGCGCACAACATCCTCTAC
ACGTACATCGCGCCGTTTCTCGCGAGCGCCGGGATGGGCACGCGCATCGACGCGACGCTGTTCGCGTTCGGCGCGGCGTC
GTTCGCGGGCATCGGTCTCACGGGCGTGTGGATCGGCAACGGGCTGCGGCGGCTCGCGCTCGCGAGCATCGCGCTTTTCG
CGCTCGCGTCCGTGCTGCTCGGCGTGGCGAGCGGATCGCCCGCGGTCGTCTATGCGAGCGTCGCCGTGTGGGGGCTCACG
TTCGGCGGCGCGGCGACGGTCTTCCAGACCGCGTCGGCGAACGCGGCGGGCGAGGCGGCGGACGTCGCGCAATCGATGAT
CGTCACGGTGTGGAATCTCGCGATCGCGGCCGGCGGCGTCGCGGGCGGCGTGCTGCTCGAGCGGTTCGGCGCGGGCGCGA
TGCCGTGGGCGCTCGTCGCGCTGCTCGTGCCCGCGTGGCTCGGCGCGTGGCGCGCGCGGCGCCACGGCTTCCCGGCGGCC
CGCGCGCCGTGA

Upstream 100 bases:

>100_bases
CACTCACCAACACGGCTTACGAGGGGATGTCGGGACGCTTCGTCGCCGACCTGCGCGACGCCGTCTACGGCGCGGGCGCG
GCCGCGCAGGAGCGGGCGGC

Downstream 100 bases:

>100_bases
CGGGCGCGATGCGCGCCCGCGCGGGTCCGTCCGGCGTCCGTCCGGCGCGGCGACTCGGCGCAACTGTTCGGCGCACGCGT
TCGACCGCTCGACGCAGGCG

Product: major facilitator family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MSDCTTRPAGFARPSREAARLPLAGLLALATAGFITIVTEALPAGLLPLMGRDLRVSDALVGQLVTVYAAGSIVAAMPLV
AATRGMRRRPLLLAALAGFVVANTATAASPYYAPVLVARCVAGVSAGLLWALLAGYASRMVDARQRGRAIAIAMLGAPVA
MSVGIPLGTALGAALGWRATFAGVTALTLALIAWVRASLPDAPGRPSGERLPVARVLRMPGVLPVLAVMFAYVLAHNILY
TYIAPFLASAGMGTRIDATLFAFGAASFAGIGLTGVWIGNGLRRLALASIALFALASVLLGVASGSPAVVYASVAVWGLT
FGGAATVFQTASANAAGEAADVAQSMIVTVWNLAIAAGGVAGGVLLERFGAGAMPWALVALLVPAWLGAWRARRHGFPAA
RAP

Sequences:

>Translated_403_residues
MSDCTTRPAGFARPSREAARLPLAGLLALATAGFITIVTEALPAGLLPLMGRDLRVSDALVGQLVTVYAAGSIVAAMPLV
AATRGMRRRPLLLAALAGFVVANTATAASPYYAPVLVARCVAGVSAGLLWALLAGYASRMVDARQRGRAIAIAMLGAPVA
MSVGIPLGTALGAALGWRATFAGVTALTLALIAWVRASLPDAPGRPSGERLPVARVLRMPGVLPVLAVMFAYVLAHNILY
TYIAPFLASAGMGTRIDATLFAFGAASFAGIGLTGVWIGNGLRRLALASIALFALASVLLGVASGSPAVVYASVAVWGLT
FGGAATVFQTASANAAGEAADVAQSMIVTVWNLAIAAGGVAGGVLLERFGAGAMPWALVALLVPAWLGAWRARRHGFPAA
RAP
>Mature_402_residues
SDCTTRPAGFARPSREAARLPLAGLLALATAGFITIVTEALPAGLLPLMGRDLRVSDALVGQLVTVYAAGSIVAAMPLVA
ATRGMRRRPLLLAALAGFVVANTATAASPYYAPVLVARCVAGVSAGLLWALLAGYASRMVDARQRGRAIAIAMLGAPVAM
SVGIPLGTALGAALGWRATFAGVTALTLALIAWVRASLPDAPGRPSGERLPVARVLRMPGVLPVLAVMFAYVLAHNILYT
YIAPFLASAGMGTRIDATLFAFGAASFAGIGLTGVWIGNGLRRLALASIALFALASVLLGVASGSPAVVYASVAVWGLTF
GGAATVFQTASANAAGEAADVAQSMIVTVWNLAIAAGGVAGGVLLERFGAGAMPWALVALLVPAWLGAWRARRHGFPAAR
AP

Specific function: Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family [H]

Homologues:

Organism=Escherichia coli, GI145693198, Length=337, Percent_Identity=29.673590504451, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787808, Length=235, Percent_Identity=28.5106382978723, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787947, Length=237, Percent_Identity=32.4894514767932, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40843; Mature: 40712

Theoretical pI: Translated: 11.93; Mature: 11.93

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDCTTRPAGFARPSREAARLPLAGLLALATAGFITIVTEALPAGLLPLMGRDLRVSDAL
CCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHH
VGQLVTVYAAGSIVAAMPLVAATRGMRRRPLLLAALAGFVVANTATAASPYYAPVLVARC
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHH
VAGVSAGLLWALLAGYASRMVDARQRGRAIAIAMLGAPVAMSVGIPLGTALGAALGWRAT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHH
FAGVTALTLALIAWVRASLPDAPGRPSGERLPVARVLRMPGVLPVLAVMFAYVLAHNILY
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
TYIAPFLASAGMGTRIDATLFAFGAASFAGIGLTGVWIGNGLRRLALASIALFALASVLL
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVASGSPAVVYASVAVWGLTFGGAATVFQTASANAAGEAADVAQSMIVTVWNLAIAAGGV
HHCCCCCCEEEHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH
AGGVLLERFGAGAMPWALVALLVPAWLGAWRARRHGFPAARAP
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SDCTTRPAGFARPSREAARLPLAGLLALATAGFITIVTEALPAGLLPLMGRDLRVSDAL
CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHH
VGQLVTVYAAGSIVAAMPLVAATRGMRRRPLLLAALAGFVVANTATAASPYYAPVLVARC
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHH
VAGVSAGLLWALLAGYASRMVDARQRGRAIAIAMLGAPVAMSVGIPLGTALGAALGWRAT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHH
FAGVTALTLALIAWVRASLPDAPGRPSGERLPVARVLRMPGVLPVLAVMFAYVLAHNILY
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
TYIAPFLASAGMGTRIDATLFAFGAASFAGIGLTGVWIGNGLRRLALASIALFALASVLL
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVASGSPAVVYASVAVWGLTFGGAATVFQTASANAAGEAADVAQSMIVTVWNLAIAAGGV
HHCCCCCCEEEHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH
AGGVLLERFGAGAMPWALVALLVPAWLGAWRARRHGFPAARAP
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA