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The map label for this gene is yhjC [H]

Identifier: 126452605

GI number: 126452605

Start: 1420103

End: 1421002

Strand: Reverse

Name: yhjC [H]

Synonym: BURPS1106A_1461

Alternate gene names: 126452605

Gene position: 1421002-1420103 (Counterclockwise)

Preceding gene: 126454692

Following gene: 126453213

Centisome position: 35.63

GC content: 69.67

Gene sequence:

>900_bases
ATGGACCGTATTGATCTCTTCCGCGTGTTCGCGCGCGTCGTCGAATGCGCGAACTTCACGCGCGCGGCCGACACGCTCGG
CATGCCGCGCTCGTCGGTTTCGGCGGCGATTCAGGAACTGGAGGGCCGCGTCGGCGCGCGGCTCCTGCATCGCACGACCC
GAAAGGTGACGCCGACGCAGGACGGCGCCGCGCTCTACGAGCGCTGCCTGCGCCTCATCGCGGACGTCGAGGAAACCGAA
AACCTGTTCCGCCATTCGATCGTCGGGCCGAGCGGCACGCTGCGCGTCGACATGCCGGGGCGCATCGGCCGCCTGATCGT
CGCGCCCGCGCTGCCCGAGTTTCTCGAGCGCTACCCGCAAATCAGCGTCGAGCTCGGCGTCACCGATCGCGCGGTGAATC
TGATCGAGGAGCGCGTCGATTGCGTGCTGCGCGTCGGCACGCTGTGCGATTCGGGCCTCGTCGCGCGCGCGATCGGCGAT
CTGCCGCTCATCAACGTCGCGAGCCCCGCGTATCTCGCGCGCCACGGCGTGCCGCGCACGCCCGCCGATCTCGAGCGCCA
CCGGCTCGTCAATTACGCGTCGCCGTCGAACGGGCGCGTCGCGCCGTGGGAATGGGTCGAGGGCGACGAAGTGAAGCGTG
TCGCGCTGCGCGCACGCGTGACCGTCAACAGCGCGGAGGCGTACATCGCGTGCTGCCTGGCGGGGCTCGGCCCGATCCAG
ATTCCCGCGTACGACGTGAACGCGCACCTGCGCGCGGGCGAACTCGTCGAAGTGCTGCCGGACCATCGCGCGGCGCCGAT
GCCGATGACGCTGCTGTATCCGCACCGGCAGCATCTGTCGCGGCGTTTTCAGGTGTTCGCGGAGTGGCTCGACGCGCTGC
TGCGGGCGAAGGTGCTATAG

Upstream 100 bases:

>100_bases
GCCGCGATGACTCCGCTTGCGTCCCCACCCGCGCGCCCTGCGCCCGCCGCCTCCGATGCGGCGGGCAGGTCGCCCCGTCC
GCGCCGCCGAGGAGCCGCCG

Downstream 100 bases:

>100_bases
GCGCGCCGGAACGCGCGCCCCGCTTCGATCGCGCCGCGCGCGCCTCAGGCGGCCGGCGGCGCGGCCGGGCGGCGACGTCG
AACGAAAAATATTACCCGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAALYERCLRLIADVEETE
NLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVELGVTDRAVNLIEERVDCVLRVGTLCDSGLVARAIGD
LPLINVASPAYLARHGVPRTPADLERHRLVNYASPSNGRVAPWEWVEGDEVKRVALRARVTVNSAEAYIACCLAGLGPIQ
IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLDALLRAKVL

Sequences:

>Translated_299_residues
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAALYERCLRLIADVEETE
NLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVELGVTDRAVNLIEERVDCVLRVGTLCDSGLVARAIGD
LPLINVASPAYLARHGVPRTPADLERHRLVNYASPSNGRVAPWEWVEGDEVKRVALRARVTVNSAEAYIACCLAGLGPIQ
IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLDALLRAKVL
>Mature_299_residues
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQDGAALYERCLRLIADVEETE
NLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQISVELGVTDRAVNLIEERVDCVLRVGTLCDSGLVARAIGD
LPLINVASPAYLARHGVPRTPADLERHRLVNYASPSNGRVAPWEWVEGDEVKRVALRARVTVNSAEAYIACCLAGLGPIQ
IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLDALLRAKVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=40.6779661016949, Blast_Score=238, Evalue=2e-64,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=32.8767123287671, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1789639, Length=287, Percent_Identity=31.7073170731707, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=31.095406360424, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=29.8611111111111, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=26.7123287671233, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87081978, Length=284, Percent_Identity=30.9859154929577, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788481, Length=304, Percent_Identity=26.6447368421053, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788706, Length=191, Percent_Identity=28.2722513089005, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789173, Length=191, Percent_Identity=27.2251308900524, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33144; Mature: 33144

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEHHHHHHHHHHCCC
ISVELGVTDRAVNLIEERVDCVLRVGTLCDSGLVARAIGDLPLINVASPAYLARHGVPRT
EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEECCCHHHHHHCCCCCC
PADLERHRLVNYASPSNGRVAPWEWVEGDEVKRVALRARVTVNSAEAYIACCLAGLGPIQ
CHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEECCHHHHHHHHHHCCCCCC
IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLDALLRAKVL
CCEECCCCCCCCCHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRIDLFRVFARVVECANFTRAADTLGMPRSSVSAAIQELEGRVGARLLHRTTRKVTPTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGAALYERCLRLIADVEETENLFRHSIVGPSGTLRVDMPGRIGRLIVAPALPEFLERYPQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEHHHHHHHHHHCCC
ISVELGVTDRAVNLIEERVDCVLRVGTLCDSGLVARAIGDLPLINVASPAYLARHGVPRT
EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEECCCHHHHHHCCCCCC
PADLERHRLVNYASPSNGRVAPWEWVEGDEVKRVALRARVTVNSAEAYIACCLAGLGPIQ
CHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEECCHHHHHHHHHHCCCCCC
IPAYDVNAHLRAGELVEVLPDHRAAPMPMTLLYPHRQHLSRRFQVFAEWLDALLRAKVL
CCEECCCCCCCCCHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]