| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126454692
Identifier: 126454692
GI number: 126454692
Start: 1422244
End: 1423650
Strand: Reverse
Name: 126454692
Synonym: BURPS1106A_1463
Alternate gene names: NA
Gene position: 1423650-1422244 (Counterclockwise)
Preceding gene: 126451797
Following gene: 126452605
Centisome position: 35.69
GC content: 73.92
Gene sequence:
>1407_bases ATGCCTAACCGATTCCGACCGTTTCCCGCCCTGTCCGCCGTTGCGGTGGCGGCCGTGCTGTCCGCCTGTTCGTCGGCGCC CAAGCCTCTTTATCAGCAGGAACAGTTCGACGCGACCACGAGCCCCTACGCGCGCACGTTCCACGAAAAATCGGCCGCGA CGTGCGAAGCCGCGCGCCGCGCGCTGCTGAGCCAGGGCTACATGGCGAGCGCGACGCGCCCGGACGCGGTCGACGGCAGC AAGAACTTCCAGCCGAGCAACGATTCGCACGTCGTCATCGAATTTCACGTCGTCTGCGCGGAGGCGGACGTCGACGGCGC ATCGAGCATCGCGTACGTGAACGCGGTGCAGGACCGCTATTCGCTGAAGAAGAGCAACACGTCGGCGAGCGTCGGGCTGA GCGTGTTCGGCTCGCTGTCGCTGCCGATCGGCTCGAGCGACGACGCGATGGTCAAGATCGCGAGCGAAACCATTCCGGCC GGCGTGTTCTACGAGCGCTTCTTCAATCTCGTCGACCATTTCCTGAAGATCGATCCGACGCGGCGCGACAAGGCGGCCGT CAAGGCGGCCGAGAAGGAGCGCGTCGCGCCGCTGCCCGAACCGGCGGAGACGGCCGAAGGCGCGCCGATGAAGCTGAAGA CGCCGGCCGCGCCGACGCCGCCGGCCGCGCCCGTGCCGGCGTCCTCGGCTGCGCCCGGGACGTCGGCGTCGTCGGCCGTG GCTGCGCCGGCGGCCGCGGGTTCCGGGCCGGCCGCTTCGGCCCCCGCCGCCCCCGTTAGGCACGCCGCGCCTGCGCCGGC TTCGGCGACGGCCGCCGCATCGGCACCCACCGCGGCATCCGCGCCGGCGCCTACGCCCGCGTCGGCTCCCGCGCCGGCTT CCACACCCGCCCCCGCGTCCGCGCCGACACCGGCGTCCGCTCCGACTCCGACTCCCGCTTCAGCTCCGACTCCCGCTTCG ATTCCTGCCCCGGCTCCAGCGTCGGCCCCGGCTTCAACTCCAGCCCCGGCTTCGGCTCCAGCCCCGGCCTCGGCTCCAGC CCCGGCTCCGACAACGAACCCGGCGTCATCGATCGCGCCGGCGGCCGCGCCATTCGCCTCGGCGATCCCGCCTGCGCGCG CCGAGAAGTTCGCCCCGGCGGTGACGGCGACGACAGCCGGTTCGGCATCGACGCCGGCCTCGGCCGCCGCGCCGTCGTCG CCGTCGTCGCCGTCGTCGCCGTGGCTGCCGCCCTTGCTGCCGCCCTTGCTGTCGCCCGACGCGCCGTCGCCCCCGGCGGA CACCGCGCGGACGGCGCCGCTCGCGCCGGCGGCATCGCCGGCAACCGCCGCGGCCGCAGCGACGAACGCCACCGCGACCG CCGGCGCGATGCAATCCGCCCCCCGCGACGACGCCGCGACGAACTGA
Upstream 100 bases:
>100_bases GCCGCGCCGCCCGGCCGTGCGCGCCGGCCGCGTCGAGCCCGCGCAACTGCCTCCGCCGGATCGCGCCGCACGTGGCCGGC CTGCCTCTTTGAATGACGCC
Downstream 100 bases:
>100_bases GCACGGCCCCCGACGCTCGCGACCCGCTGAGGCGCGAGCGCCTTCGCCATCGCCCTCACGATCGCGATCGACCGGCCCGG CCGCGTGCGCGGCGGCGCGG
Product: putative lipoprotein
Products: NA
Alternate protein names: Lipoprotein Transmembrane; Lipoprotein Protein; Large Tegument Domain-Containing Protein
Number of amino acids: Translated: 468; Mature: 467
Protein sequence:
>468_residues MPNRFRPFPALSAVAVAAVLSACSSAPKPLYQQEQFDATTSPYARTFHEKSAATCEAARRALLSQGYMASATRPDAVDGS KNFQPSNDSHVVIEFHVVCAEADVDGASSIAYVNAVQDRYSLKKSNTSASVGLSVFGSLSLPIGSSDDAMVKIASETIPA GVFYERFFNLVDHFLKIDPTRRDKAAVKAAEKERVAPLPEPAETAEGAPMKLKTPAAPTPPAAPVPASSAAPGTSASSAV AAPAAAGSGPAASAPAAPVRHAAPAPASATAAASAPTAASAPAPTPASAPAPASTPAPASAPTPASAPTPTPASAPTPAS IPAPAPASAPASTPAPASAPAPASAPAPAPTTNPASSIAPAAAPFASAIPPARAEKFAPAVTATTAGSASTPASAAAPSS PSSPSSPWLPPLLPPLLSPDAPSPPADTARTAPLAPAASPATAAAAATNATATAGAMQSAPRDDAATN
Sequences:
>Translated_468_residues MPNRFRPFPALSAVAVAAVLSACSSAPKPLYQQEQFDATTSPYARTFHEKSAATCEAARRALLSQGYMASATRPDAVDGS KNFQPSNDSHVVIEFHVVCAEADVDGASSIAYVNAVQDRYSLKKSNTSASVGLSVFGSLSLPIGSSDDAMVKIASETIPA GVFYERFFNLVDHFLKIDPTRRDKAAVKAAEKERVAPLPEPAETAEGAPMKLKTPAAPTPPAAPVPASSAAPGTSASSAV AAPAAAGSGPAASAPAAPVRHAAPAPASATAAASAPTAASAPAPTPASAPAPASTPAPASAPTPASAPTPTPASAPTPAS IPAPAPASAPASTPAPASAPAPASAPAPAPTTNPASSIAPAAAPFASAIPPARAEKFAPAVTATTAGSASTPASAAAPSS PSSPSSPWLPPLLPPLLSPDAPSPPADTARTAPLAPAASPATAAAAATNATATAGAMQSAPRDDAATN >Mature_467_residues PNRFRPFPALSAVAVAAVLSACSSAPKPLYQQEQFDATTSPYARTFHEKSAATCEAARRALLSQGYMASATRPDAVDGSK NFQPSNDSHVVIEFHVVCAEADVDGASSIAYVNAVQDRYSLKKSNTSASVGLSVFGSLSLPIGSSDDAMVKIASETIPAG VFYERFFNLVDHFLKIDPTRRDKAAVKAAEKERVAPLPEPAETAEGAPMKLKTPAAPTPPAAPVPASSAAPGTSASSAVA APAAAGSGPAASAPAAPVRHAAPAPASATAAASAPTAASAPAPTPASAPAPASTPAPASAPTPASAPTPTPASAPTPASI PAPAPASAPASTPAPASAPAPASAPAPAPTTNPASSIAPAAAPFASAIPPARAEKFAPAVTATTAGSASTPASAAAPSSP SSPSSPWLPPLLPPLLSPDAPSPPADTARTAPLAPAASPATAAAAATNATATAGAMQSAPRDDAATN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45513; Mature: 45382
Theoretical pI: Translated: 7.05; Mature: 7.05
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNRFRPFPALSAVAVAAVLSACSSAPKPLYQQEQFDATTSPYARTFHEKSAATCEAARR CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH ALLSQGYMASATRPDAVDGSKNFQPSNDSHVVIEFHVVCAEADVDGASSIAYVNAVQDRY HHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHH SLKKSNTSASVGLSVFGSLSLPIGSSDDAMVKIASETIPAGVFYERFFNLVDHFLKIDPT HHHHCCCCHHHHHHHHEEEECCCCCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHCCCC RRDKAAVKAAEKERVAPLPEPAETAEGAPMKLKTPAAPTPPAAPVPASSAAPGTSASSAV CHHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHH AAPAAAGSGPAASAPAAPVRHAAPAPASATAAASAPTAASAPAPTPASAPAPASTPAPAS HCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC APTPASAPTPTPASAPTPASIPAPAPASAPASTPAPASAPAPASAPAPAPTTNPASSIAP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC AAAPFASAIPPARAEKFAPAVTATTAGSASTPASAAAPSSPSSPSSPWLPPLLPPLLSPD HHHHHHHCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC APSPPADTARTAPLAPAASPATAAAAATNATATAGAMQSAPRDDAATN CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCC >Mature Secondary Structure PNRFRPFPALSAVAVAAVLSACSSAPKPLYQQEQFDATTSPYARTFHEKSAATCEAARR CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH ALLSQGYMASATRPDAVDGSKNFQPSNDSHVVIEFHVVCAEADVDGASSIAYVNAVQDRY HHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHH SLKKSNTSASVGLSVFGSLSLPIGSSDDAMVKIASETIPAGVFYERFFNLVDHFLKIDPT HHHHCCCCHHHHHHHHEEEECCCCCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHCCCC RRDKAAVKAAEKERVAPLPEPAETAEGAPMKLKTPAAPTPPAAPVPASSAAPGTSASSAV CHHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHH AAPAAAGSGPAASAPAAPVRHAAPAPASATAAASAPTAASAPAPTPASAPAPASTPAPAS HCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC APTPASAPTPTPASAPTPASIPAPAPASAPASTPAPASAPAPASAPAPAPTTNPASSIAP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC AAAPFASAIPPARAEKFAPAVTATTAGSASTPASAAAPSSPSSPSSPWLPPLLPPLLSPD HHHHHHHCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC APSPPADTARTAPLAPAASPATAAAAATNATATAGAMQSAPRDDAATN CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA