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The map label for this gene is ydcN [H]

Identifier: 126452578

GI number: 126452578

Start: 706732

End: 707400

Strand: Direct

Name: ydcN [H]

Synonym: BURPS1106A_0728

Alternate gene names: 126452578

Gene position: 706732-707400 (Clockwise)

Preceding gene: 126453727

Following gene: 126454336

Centisome position: 17.72

GC content: 70.1

Gene sequence:

>669_bases
ATGCATTCACCGTTGGCGCTCGTGCGCGATGTGTCTTCACAGGATGCCGCTGCGGCGGCCGATGCCGATGCGTCGCATGC
GCCGTTCGATGCGCTCGAGCGGCTCGTCGGCGTGAATCTCGCGCGGCTGCGCGCGGAACGCCAGCTGTCGCTCGACGCGC
TCGCGCGGCTCTCGGGCGTGTCGCGCGCGATGCTCGCGCAGATCGAATCGGCGCGCAGCGTGCCGTCGATCAAGGTGCTC
TGCAAGGTCGCGGCCGCGCTGAAGGTGTCGGTCGCCGCGTTCCTGCGCCGCCACGCGGTCAACGGTTTCGAGCATCTGAG
CGCCGAGCGCGCGGTGCGCGTCGTCAGCTCGAATGGGCGCTTTTCCGCGCGCGCGCTGTATCCGGAAGGCGAGCCCGCGG
TCGCCGAGTTTCACGAGCTGCGGATCGCGCCGCTGCACACCGAACACGGCGCGCCGCGCGCGCCCGGCACGAGCGTGAAT
CTTGTCGTCAGCGAAGGCACGCTCGAAGTCAGCATCCACGAGCGCCGCCAATTGCTCGCGACGGGCGACGCGATCGTGTT
CGACGCCGATCAGCCGTACACGCTGCGCAATCCGGGCGATACCGAGGCGCGGGCGTTTCGCGTGACGGTGAACGCCGAAG
TGCCGCCGCGCTGGCACGTGCCGGCATGA

Upstream 100 bases:

>100_bases
TAACAGTGTGAAGATAACTTTGTTTGATGGCACCGTGGCGGATGTTAGTCTTAGCCTCATCTGAAACCGCTGGGCCCGCT
CGGGCCCTGGAGGCAACGTC

Downstream 100 bases:

>100_bases
AGCCGCGGGGCGTCGCGCACGCGCGCGGCGCGGCGCGGTTTAGACGGATTCGTCAGTAGGGTCTTGTCGAGGCTCCGCTG
CGGCGATTTCGCGGCTGTTG

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MHSPLALVRDVSSQDAAAAADADASHAPFDALERLVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVL
CKVAAALKVSVAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEHGAPRAPGTSVN
LVVSEGTLEVSIHERRQLLATGDAIVFDADQPYTLRNPGDTEARAFRVTVNAEVPPRWHVPA

Sequences:

>Translated_222_residues
MHSPLALVRDVSSQDAAAAADADASHAPFDALERLVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVL
CKVAAALKVSVAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEHGAPRAPGTSVN
LVVSEGTLEVSIHERRQLLATGDAIVFDADQPYTLRNPGDTEARAFRVTVNAEVPPRWHVPA
>Mature_222_residues
MHSPLALVRDVSSQDAAAAADADASHAPFDALERLVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVL
CKVAAALKVSVAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEHGAPRAPGTSVN
LVVSEGTLEVSIHERRQLLATGDAIVFDADQPYTLRNPGDTEARAFRVTVNAEVPPRWHVPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=172, Percent_Identity=27.906976744186, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 23822; Mature: 23822

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSPLALVRDVSSQDAAAAADADASHAPFDALERLVGVNLARLRAERQLSLDALARLSGV
CCCCHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
SRAMLAQIESARSVPSIKVLCKVAAALKVSVAAFLRRHAVNGFEHLSAERAVRVVSSNGR
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEEECCCC
FSARALYPEGEPAVAEFHELRIAPLHTEHGAPRAPGTSVNLVVSEGTLEVSIHERRQLLA
EEEEEECCCCCCHHHHHHHEEEEEEECCCCCCCCCCCEEEEEEECCEEEEEEHHHHHHHC
TGDAIVFDADQPYTLRNPGDTEARAFRVTVNAEVPPRWHVPA
CCCEEEEECCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MHSPLALVRDVSSQDAAAAADADASHAPFDALERLVGVNLARLRAERQLSLDALARLSGV
CCCCHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
SRAMLAQIESARSVPSIKVLCKVAAALKVSVAAFLRRHAVNGFEHLSAERAVRVVSSNGR
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEEECCCC
FSARALYPEGEPAVAEFHELRIAPLHTEHGAPRAPGTSVNLVVSEGTLEVSIHERRQLLA
EEEEEECCCCCCHHHHHHHEEEEEEECCCCCCCCCCCEEEEEEECCEEEEEEHHHHHHHC
TGDAIVFDADQPYTLRNPGDTEARAFRVTVNAEVPPRWHVPA
CCCEEEEECCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]