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The map label for this gene is ribB [H]

Identifier: 126454336

GI number: 126454336

Start: 707824

End: 708546

Strand: Direct

Name: ribB [H]

Synonym: BURPS1106A_0729

Alternate gene names: 126454336

Gene position: 707824-708546 (Clockwise)

Preceding gene: 126452578

Following gene: 126452225

Centisome position: 17.75

GC content: 70.12

Gene sequence:

>723_bases
ATGTCGTTTCCGTTGCCTTCGAAGTCGGCGCCCGCCGACGCATTTTCCGATTTTCCGTTGCTCGACGCCGAACCGGTGCC
GCCGCGCATCGCCGCCGCGCTCGCCGCGCTGCGCGAAGGGCGCGCGGTCGTGCTGCAGGACGACCACGACCGCGAGAACG
AAGCCGATCTGATCGTCGCCGCCGAGCGGCTCACCGACGAGACGATGGCGCTGTTGATCCGCGAGTGCAGCGGCATCGTC
TGCCTGTGTCTGACGGACGAAAAGGTGCGCGCGCTCGAGCTGCCGCCGATGGCGCAATTGAACGAGAGCAAGAACGGCAC
CGCGTTCACGGTGTCGATCGAGGCACGCGCCGGCGTGACGACCGGCGTGTCGGCCGCCGATCGCGTGACGACGATCCGCG
CGGCGATCGCCGATAACGCGTCGCCGCACGACATCGTGCGCCCCGGCCATGTGTTTCCGCTGCGCGCGGCGCCGGGCGGC
GTGCTTGCGCGGCGCGGCCACACCGAGGGCACCGTCGATCTCGCGATCCTCGCGGGATTGAAGCCCGCCGGCGTGCTGTG
CGAGCTGATGAATCCGGACGGCACGATGACGCGCGGCGCGGACGTCGAGCGCTTCGCCGCGCAGCACGGGTTGCCGATGC
TGACGATCGCCGAGCTCGTCGCGTTCCGCGAGCGGCTTGCGTCGTTACGCGAACGCGACGCATGCTGCGCGGACCTCGCC
TGA

Upstream 100 bases:

>100_bases
GGCTTCGTCCGCGCGGCGCGGAAGCGGCGTCGCGCTGTCTGTTTGCTGAGCCCTGAAACGTTTTTCGCCCATTCATGTTT
CGCGAGGAGCGTTTCACATC

Downstream 100 bases:

>100_bases
GCGGTTCGGATCCGGCGGCGGCTCGTGCGCGGCGCGCAAGCCACGCACGAGAGGGGAGTTCGCCCGGCTAGGACTGCTGG
CTGCCGAATTCGCCGCGCAT

Product: 3,4-dihydroxy-2-butanone 4-phosphate synthase

Products: NA

Alternate protein names: DHBP synthase [H]

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSFPLPSKSAPADAFSDFPLLDAEPVPPRIAAALAALREGRAVVLQDDHDRENEADLIVAAERLTDETMALLIRECSGIV
CLCLTDEKVRALELPPMAQLNESKNGTAFTVSIEARAGVTTGVSAADRVTTIRAAIADNASPHDIVRPGHVFPLRAAPGG
VLARRGHTEGTVDLAILAGLKPAGVLCELMNPDGTMTRGADVERFAAQHGLPMLTIAELVAFRERLASLRERDACCADLA

Sequences:

>Translated_240_residues
MSFPLPSKSAPADAFSDFPLLDAEPVPPRIAAALAALREGRAVVLQDDHDRENEADLIVAAERLTDETMALLIRECSGIV
CLCLTDEKVRALELPPMAQLNESKNGTAFTVSIEARAGVTTGVSAADRVTTIRAAIADNASPHDIVRPGHVFPLRAAPGG
VLARRGHTEGTVDLAILAGLKPAGVLCELMNPDGTMTRGADVERFAAQHGLPMLTIAELVAFRERLASLRERDACCADLA
>Mature_239_residues
SFPLPSKSAPADAFSDFPLLDAEPVPPRIAAALAALREGRAVVLQDDHDRENEADLIVAAERLTDETMALLIRECSGIVC
LCLTDEKVRALELPPMAQLNESKNGTAFTVSIEARAGVTTGVSAADRVTTIRAAIADNASPHDIVRPGHVFPLRAAPGGV
LARRGHTEGTVDLAILAGLKPAGVLCELMNPDGTMTRGADVERFAAQHGLPMLTIAELVAFRERLASLRERDACCADLA

Specific function: Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate [H]

COG id: COG0108

COG function: function code H; 3,4-dihydroxy-2-butanone 4-phosphate synthase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHBP synthase family [H]

Homologues:

Organism=Escherichia coli, GI1789420, Length=203, Percent_Identity=62.0689655172414, Blast_Score=246, Evalue=1e-66,
Organism=Saccharomyces cerevisiae, GI6320695, Length=204, Percent_Identity=42.156862745098, Blast_Score=170, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR000422 [H]

Pfam domain/function: PF00926 DHBP_synthase [H]

EC number: =4.1.99.12 [H]

Molecular weight: Translated: 25407; Mature: 25276

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFPLPSKSAPADAFSDFPLLDAEPVPPRIAAALAALREGRAVVLQDDHDRENEADLIVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEE
AERLTDETMALLIRECSGIVCLCLTDEKVRALELPPMAQLNESKNGTAFTVSIEARAGVT
HHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCHHCCCCCCCEEEEEEEEECCCCC
TGVSAADRVTTIRAAIADNASPHDIVRPGHVFPLRAAPGGVLARRGHTEGTVDLAILAGL
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCCCEEEEEEECC
KPAGVLCELMNPDGTMTRGADVERFAAQHGLPMLTIAELVAFRERLASLRERDACCADLA
CCCHHEEEEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
SFPLPSKSAPADAFSDFPLLDAEPVPPRIAAALAALREGRAVVLQDDHDRENEADLIVA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEE
AERLTDETMALLIRECSGIVCLCLTDEKVRALELPPMAQLNESKNGTAFTVSIEARAGVT
HHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCHHCCCCCCCEEEEEEEEECCCCC
TGVSAADRVTTIRAAIADNASPHDIVRPGHVFPLRAAPGGVLARRGHTEGTVDLAILAGL
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCCCEEEEEEECC
KPAGVLCELMNPDGTMTRGADVERFAAQHGLPMLTIAELVAFRERLASLRERDACCADLA
CCCHHEEEEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA