Click here to switch to the map view.

The map label for this gene is rlpA [C]

Identifier: 126451953

GI number: 126451953

Start: 3810040

End: 3810675

Strand: Reverse

Name: rlpA [C]

Synonym: BURPS1106A_3902

Alternate gene names: 126451953

Gene position: 3810675-3810040 (Counterclockwise)

Preceding gene: 126454165

Following gene: 126453291

Centisome position: 95.54

GC content: 66.04

Gene sequence:

>636_bases
ATGAAATTTCGATTACCGAGGCATCTCGGGACTCTAGCTGTATTTTTCGCGCTGACAGGCTGCGCGGTGCCGCCGAACGC
ACCGACCTCCGAGCAGGCGAAAAGCGCCGCGTCGAAGGATGCGCTGCGCACGGCCGCATCGGGCGCGGCCAGCAACAATA
AGGAATCGGCGGGCGCGCCGCTGAACTTCGACACGGCGCTCGCCTCGATGCCGGCCGCCGGCTCGCAGGACGTCTCGCGC
CAATCGCTCGCGGACGCGAAGCCGATCGATGCCGCGGACATCTCGGATTTCCGGCAGACCGGCCGCGCGTCATGGTACGG
CAAGGGTTTTCACGGCCGCCGCACCGCGAACGGCGAACGCTTCAACATGAACGAATTCACCGCCGCACACCGGACGCTGC
CGCTCGCGTCATACGTGCGCGTGACGAACCAGGCGAACGGCAAGTCCGTCGTCGTGAAGATCAATGATCGCGGTCCGTTC
TCGCGCGGGCGGATCCTCGATCTGTCGTACGCGGCCGCGAAGGTGATCGGCCTGGTCCATGCGGGTACCGCGCGCGTGAA
GATCCAGGGGCTCTCGCCTGAAGAGGCGCGCGTCGCGCGCGACGAGATGCTCGCGTCGAACAGCACGACGAAGTAA

Upstream 100 bases:

>100_bases
CGCGCCAATGCAAGCCGCCCGCGCAAGCGCGACTGGGGCATGCATGTCCGTCCGGATCGCATTCGTAGCGACACGATCCG
TACAAGCAGGCGACACGTCG

Downstream 100 bases:

>100_bases
TCGCGACAACGGCGTTGCATCGCCCGCCGAGCGGCGATCGAACGCAGACGAAAAGGGCCGCTTCATGCGGCCCTTTCGCT
TTTGCAGCGAATCCTTACTC

Product: rare lipoprotein A family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKFRLPRHLGTLAVFFALTGCAVPPNAPTSEQAKSAASKDALRTAASGAASNNKESAGAPLNFDTALASMPAAGSQDVSR
QSLADAKPIDAADISDFRQTGRASWYGKGFHGRRTANGERFNMNEFTAAHRTLPLASYVRVTNQANGKSVVVKINDRGPF
SRGRILDLSYAAAKVIGLVHAGTARVKIQGLSPEEARVARDEMLASNSTTK

Sequences:

>Translated_211_residues
MKFRLPRHLGTLAVFFALTGCAVPPNAPTSEQAKSAASKDALRTAASGAASNNKESAGAPLNFDTALASMPAAGSQDVSR
QSLADAKPIDAADISDFRQTGRASWYGKGFHGRRTANGERFNMNEFTAAHRTLPLASYVRVTNQANGKSVVVKINDRGPF
SRGRILDLSYAAAKVIGLVHAGTARVKIQGLSPEEARVARDEMLASNSTTK
>Mature_211_residues
MKFRLPRHLGTLAVFFALTGCAVPPNAPTSEQAKSAASKDALRTAASGAASNNKESAGAPLNFDTALASMPAAGSQDVSR
QSLADAKPIDAADISDFRQTGRASWYGKGFHGRRTANGERFNMNEFTAAHRTLPLASYVRVTNQANGKSVVVKINDRGPF
SRGRILDLSYAAAKVIGLVHAGTARVKIQGLSPEEARVARDEMLASNSTTK

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=81, Percent_Identity=50.6172839506173, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 22316; Mature: 22316

Theoretical pI: Translated: 10.88; Mature: 10.88

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFRLPRHLGTLAVFFALTGCAVPPNAPTSEQAKSAASKDALRTAASGAASNNKESAGAP
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
LNFDTALASMPAAGSQDVSRQSLADAKPIDAADISDFRQTGRASWYGKGFHGRRTANGER
CCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCE
FNMNEFTAAHRTLPLASYVRVTNQANGKSVVVKINDRGPFSRGRILDLSYAAAKVIGLVH
ECCHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHC
AGTARVKIQGLSPEEARVARDEMLASNSTTK
CCCEEEEEECCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKFRLPRHLGTLAVFFALTGCAVPPNAPTSEQAKSAASKDALRTAASGAASNNKESAGAP
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
LNFDTALASMPAAGSQDVSRQSLADAKPIDAADISDFRQTGRASWYGKGFHGRRTANGER
CCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCE
FNMNEFTAAHRTLPLASYVRVTNQANGKSVVVKINDRGPFSRGRILDLSYAAAKVIGLVH
ECCHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHC
AGTARVKIQGLSPEEARVARDEMLASNSTTK
CCCEEEEEECCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]