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The map label for this gene is ydfM [H]

Identifier: 126454165

GI number: 126454165

Start: 3813301

End: 3814491

Strand: Reverse

Name: ydfM [H]

Synonym: BURPS1106A_3907

Alternate gene names: 126454165

Gene position: 3814491-3813301 (Counterclockwise)

Preceding gene: 126454120

Following gene: 126451953

Centisome position: 95.64

GC content: 65.99

Gene sequence:

>1191_bases
ATGTCCACATTTTCAAACGACGACCTGGCGTCGGAAAAACAGGTCGTCGCCCGTCAGAGCACATTCGTCAGTATCGTCCT
CAACGTGATTCTGGCGACGCTGCAGGTGGTGGTCGGTGTAATTGCGCATTCCCAGGCTTTGATTGCCGATGGCGTCCACT
CTTTGTCGGATCTGGTTTCCGATTTCGTGGTACTGCTCGCCAATCGGCATAGCGGCGCAAAACCGGACGCCGACCACAAT
TACGGTCACAGCCGTTATGAAACGGTTGCTTCATTCTTTCTCGGAGCGATCCTGATTGCGGTCGGCGTGGGGATGCTGTG
GCGCGCGGGCGACCGGCTCGTGCATCTCGAAGACATCCCGCCCGTGCATGCGAGCGCGCTGGCCGTCGCCGTGGTCGTGC
TGCTGTCGAAGGAGGGGCTGTTTCGCTACATGCTGCGCGAGGCGCAGCGCGTGCGCTCCGCGATGCTCGTCGCGAACGCG
TGGCATGCGCGCTCGGACGCCGCGTCGTCGCTGGTCGTCGCGATCGGCATCATCGGCAGCCTCGCCGGCGTGCGCCTTCT
CGATCCGATCGCCGCGGCGATCGTCGGCTTCATGGTCGCGCGCATGGGCTGGACGTTCGGCTGGGACGCGCTGCAGGACC
TGTCGGACCGCGCGCTCGACGAGAGCGCGTCGGCCGAGATCCGCGCGCTCATCGTATCGACGCCCGGCGTGCGCGACGTG
CACGACCTGCGCACTCGCAAGATGGGCGATTCGGCGCTCGTCGACGCGCATATTCTCGTCGATCCGATGATGTCCGTCTC
CGAGGGGCACTACATCGCGGAGGCCGCGCGCTCGCGCGCGCTCACCGACCGGCGCGTGCTCGACGCGCTGATCCACGTCG
ATCCCGAGCACGACGTCGCGCGCCGCACGGTGCTCGATCTGCCGCCGCGCGATCAGCTCGAAGGGCAAATCGAGGCGACG
CTCGAGAAAGCGGGGCTGCGGGCGAGCGCGATCAATCTGCATTACCTGAGCACGGGGCTCGAAATCGACATCACGCTTGC
ACCGGATGCAAGCCGGGATCGGCAGGGCGGCCACGACCCGGCCGCTCGTTTGGATATCGAAGCATTGAAGCGGCAGTTCG
GCGCACGGCGTCTCGGCATGTCGCGCGCGCTTGCGTCAAGCGACGCGGCGGCGGTTGGCCGGCTGTCCTGA

Upstream 100 bases:

>100_bases
TCATAAGCGATTGATTTTGTTTGTTTTTTTGGTGGGCGGCCGCGCGCGTTCGAGCCCGGCTTGATAGAATTGCGGTGTCC
ATCGCCGCATTCGATATTAC

Downstream 100 bases:

>100_bases
TCAGGGGCGAGCGCGATGCAAAAGAGTGCGGCACGGCGCTGCGCGTGCCGCGGCGCGCGCCGAGCGCCGGGCCGGCGAGC
GCGCGCCGGCGCGATCGCGC

Product: cation efflux family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSTFSNDDLASEKQVVARQSTFVSIVLNVILATLQVVVGVIAHSQALIADGVHSLSDLVSDFVVLLANRHSGAKPDADHN
YGHSRYETVASFFLGAILIAVGVGMLWRAGDRLVHLEDIPPVHASALAVAVVVLLSKEGLFRYMLREAQRVRSAMLVANA
WHARSDAASSLVVAIGIIGSLAGVRLLDPIAAAIVGFMVARMGWTFGWDALQDLSDRALDESASAEIRALIVSTPGVRDV
HDLRTRKMGDSALVDAHILVDPMMSVSEGHYIAEAARSRALTDRRVLDALIHVDPEHDVARRTVLDLPPRDQLEGQIEAT
LEKAGLRASAINLHYLSTGLEIDITLAPDASRDRQGGHDPAARLDIEALKRQFGARRLGMSRALASSDAAAVGRLS

Sequences:

>Translated_396_residues
MSTFSNDDLASEKQVVARQSTFVSIVLNVILATLQVVVGVIAHSQALIADGVHSLSDLVSDFVVLLANRHSGAKPDADHN
YGHSRYETVASFFLGAILIAVGVGMLWRAGDRLVHLEDIPPVHASALAVAVVVLLSKEGLFRYMLREAQRVRSAMLVANA
WHARSDAASSLVVAIGIIGSLAGVRLLDPIAAAIVGFMVARMGWTFGWDALQDLSDRALDESASAEIRALIVSTPGVRDV
HDLRTRKMGDSALVDAHILVDPMMSVSEGHYIAEAARSRALTDRRVLDALIHVDPEHDVARRTVLDLPPRDQLEGQIEAT
LEKAGLRASAINLHYLSTGLEIDITLAPDASRDRQGGHDPAARLDIEALKRQFGARRLGMSRALASSDAAAVGRLS
>Mature_395_residues
STFSNDDLASEKQVVARQSTFVSIVLNVILATLQVVVGVIAHSQALIADGVHSLSDLVSDFVVLLANRHSGAKPDADHNY
GHSRYETVASFFLGAILIAVGVGMLWRAGDRLVHLEDIPPVHASALAVAVVVLLSKEGLFRYMLREAQRVRSAMLVANAW
HARSDAASSLVVAIGIIGSLAGVRLLDPIAAAIVGFMVARMGWTFGWDALQDLSDRALDESASAEIRALIVSTPGVRDVH
DLRTRKMGDSALVDAHILVDPMMSVSEGHYIAEAARSRALTDRRVLDALIHVDPEHDVARRTVLDLPPRDQLEGQIEATL
EKAGLRASAINLHYLSTGLEIDITLAPDASRDRQGGHDPAARLDIEALKRQFGARRLGMSRALASSDAAAVGRLS

Specific function: Unknown

COG id: COG0053

COG function: function code P; Predicted Co/Zn/Cd cation transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family [H]

Homologues:

Organism=Escherichia coli, GI1790349, Length=263, Percent_Identity=26.9961977186312, Blast_Score=83, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6325032, Length=223, Percent_Identity=29.5964125560538, Blast_Score=103, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6323831, Length=239, Percent_Identity=31.3807531380753, Blast_Score=100, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002524 [H]

Pfam domain/function: PF01545 Cation_efflux [H]

EC number: NA

Molecular weight: Translated: 42516; Mature: 42385

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTFSNDDLASEKQVVARQSTFVSIVLNVILATLQVVVGVIAHSQALIADGVHSLSDLVS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFVVLLANRHSGAKPDADHNYGHSRYETVASFFLGAILIAVGVGMLWRAGDRLVHLEDIP
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
PVHASALAVAVVVLLSKEGLFRYMLREAQRVRSAMLVANAWHARSDAASSLVVAIGIIGS
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LAGVRLLDPIAAAIVGFMVARMGWTFGWDALQDLSDRALDESASAEIRALIVSTPGVRDV
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHH
HDLRTRKMGDSALVDAHILVDPMMSVSEGHYIAEAARSRALTDRRVLDALIHVDPEHDVA
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RRTVLDLPPRDQLEGQIEATLEKAGLRASAINLHYLSTGLEIDITLAPDASRDRQGGHDP
HHHHHCCCCHHHHCHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCC
AARLDIEALKRQFGARRLGMSRALASSDAAAVGRLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
STFSNDDLASEKQVVARQSTFVSIVLNVILATLQVVVGVIAHSQALIADGVHSLSDLVS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFVVLLANRHSGAKPDADHNYGHSRYETVASFFLGAILIAVGVGMLWRAGDRLVHLEDIP
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
PVHASALAVAVVVLLSKEGLFRYMLREAQRVRSAMLVANAWHARSDAASSLVVAIGIIGS
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LAGVRLLDPIAAAIVGFMVARMGWTFGWDALQDLSDRALDESASAEIRALIVSTPGVRDV
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHH
HDLRTRKMGDSALVDAHILVDPMMSVSEGHYIAEAARSRALTDRRVLDALIHVDPEHDVA
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RRTVLDLPPRDQLEGQIEATLEKAGLRASAINLHYLSTGLEIDITLAPDASRDRQGGHDP
HHHHHCCCCHHHHCHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCC
AARLDIEALKRQFGARRLGMSRALASSDAAAVGRLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]