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The map label for this gene is tctD [H]

Identifier: 126451555

GI number: 126451555

Start: 39533

End: 40210

Strand: Direct

Name: tctD [H]

Synonym: BURPS1106A_0042

Alternate gene names: 126451555

Gene position: 39533-40210 (Clockwise)

Preceding gene: 126454126

Following gene: 126454428

Centisome position: 0.99

GC content: 67.4

Gene sequence:

>678_bases
ATGAAACTGCTGCTCGTGGAAGACAACGCGGAACTCGCGCACTGGATCGTCGATCTGCTGCGCGGCGAAGGCTTCGGCGT
CGATTCGGCGCCCGACGGCGAGAGCGCGGACACCGTGCTGAAGGCGCAGCGCTACGACGCGCTGCTGCTCGACATGCGGC
TGCCCGGCATGAGCGGCAAGGAGTTGCTCGCGCGGCTGCGCCGCCGCGGCGACAACGTCCCCGTGCTGATGCTGACCGCG
CACGGCTCGGTCGACGACAAGGTCGACTGCTTCAGCGCGGGCGCCGACGACTACGTCGTGAAGCCGTTCGAATCGCGCGA
GCTCGTCGCGCGCATTCGCGCGTTGATCCGGCGGCAATGCGGCGTCGGCGCGACGCAGCTCGCATGCGGCGATCTCGTTT
ATCTGTTCGCGACGCGAGAATTCCAGTGCGGCGGCGCGCCGCTCGCGCTGCGCCGCCGCGAGCACGCGATTCTCGAAACG
CTGATGCTCCAGCAGGGCAAGACGGTCTCGAAGGCGCGCCTCATGGACAGCGTGTACGGCCTCGACGACGAGCCGAGCGC
CGATGCGATCGACATCTACATCCACCGTCTGCGCAAGCATCTGTCCGGCTCGCTCGCGCAGATCATCACGCTGCGCGGGC
TCGGCTACATTCTTCGAACCCAGGACGCGGCCGAATAA

Upstream 100 bases:

>100_bases
CAGTCGCACGGCGGCGCGGTGTCGCTTGCCACAGGCCCCGGCAACCGGGGCGTGAGGATGACCGTGCGGCTGCCCGCCTA
TCGCAATTGAGAGAGCCCCG

Downstream 100 bases:

>100_bases
TCCGCGCGCAACGCACGCGCTCCGGCGCATGCGCTGCAAGTGCCGCCCGTCCGCGCCCGCTTACTTCGGCCTGCTTTGCC
ATTGTTCCGATGTTTCGCGA

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MKLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKELLARLRRRGDNVPVLMLTA
HGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCGVGATQLACGDLVYLFATREFQCGGAPLALRRREHAILET
LMLQQGKTVSKARLMDSVYGLDDEPSADAIDIYIHRLRKHLSGSLAQIITLRGLGYILRTQDAAE

Sequences:

>Translated_225_residues
MKLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKELLARLRRRGDNVPVLMLTA
HGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCGVGATQLACGDLVYLFATREFQCGGAPLALRRREHAILET
LMLQQGKTVSKARLMDSVYGLDDEPSADAIDIYIHRLRKHLSGSLAQIITLRGLGYILRTQDAAE
>Mature_225_residues
MKLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKELLARLRRRGDNVPVLMLTA
HGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCGVGATQLACGDLVYLFATREFQCGGAPLALRRREHAILET
LMLQQGKTVSKARLMDSVYGLDDEPSADAIDIYIHRLRKHLSGSLAQIITLRGLGYILRTQDAAE

Specific function: Transcriptional activator of the tctI tricarboxylate transport system operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790552, Length=218, Percent_Identity=39.4495412844037, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=35.7798165137615, Blast_Score=144, Evalue=4e-36,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=37.2727272727273, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=32.7433628318584, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI87082012, Length=221, Percent_Identity=32.579185520362, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=33.920704845815, Blast_Score=120, Evalue=5e-29,
Organism=Escherichia coli, GI1786599, Length=225, Percent_Identity=33.7777777777778, Blast_Score=118, Evalue=2e-28,
Organism=Escherichia coli, GI1790860, Length=222, Percent_Identity=35.1351351351351, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=38.1578947368421, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790863, Length=226, Percent_Identity=30.5309734513274, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1788394, Length=220, Percent_Identity=30, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787229, Length=224, Percent_Identity=30.3571428571429, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1786911, Length=220, Percent_Identity=30, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1790299, Length=115, Percent_Identity=33.0434782608696, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788191, Length=121, Percent_Identity=33.8842975206612, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=30.8411214953271, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790437, Length=112, Percent_Identity=32.1428571428571, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24820; Mature: 24820

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGK
CEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCEEEEEEECCCCCHH
ELLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQC
HHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHH
GVGATQLACGDLVYLFATREFQCGGAPLALRRREHAILETLMLQQGKTVSKARLMDSVYG
CCCHHHHHHHHEEEEEEECEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
LDDEPSADAIDIYIHRLRKHLSGSLAQIITLRGLGYILRTQDAAE
CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEECCCCCC
>Mature Secondary Structure
MKLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGK
CEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCEEEEEEECCCCCHH
ELLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQC
HHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHH
GVGATQLACGDLVYLFATREFQCGGAPLALRRREHAILETLMLQQGKTVSKARLMDSVYG
CCCHHHHHHHHEEEEEEECEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
LDDEPSADAIDIYIHRLRKHLSGSLAQIITLRGLGYILRTQDAAE
CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2666399; 11083839; 11677609 [H]