Click here to switch to the map view.

The map label for this gene is rssA [H]

Identifier: 126454126

GI number: 126454126

Start: 38143

End: 39522

Strand: Direct

Name: rssA [H]

Synonym: BURPS1106A_0041

Alternate gene names: 126454126

Gene position: 38143-39522 (Clockwise)

Preceding gene: 126453348

Following gene: 126451555

Centisome position: 0.96

GC content: 71.38

Gene sequence:

>1380_bases
ATGTCGCACAGCCTGCGCGGCCGACTGCTTTGGTGGCTGCTGCTGCCGCTCGCCGTGTTCGTCGCGATCGCGGGCGCGAT
GTCGTACGACACCGCGCGCAAGACGGCCGATCTCGTGCAGGACGGCGCGCTCGTCGCGTCCGCGCGCGTGATCGCCGAGG
ACGTCGATTGGGAAGGCGGCGCGCTCGTCGCGAACGTGCCGCCCGCCGCGCTCGAGCTGTTCGCATCGCCCGCGCAGGAT
CACGTGTACTACAAGGTGCGCACGGGCGGCGGGCGGCTGCTCGCCGGCAATCCCGATCTCGACGGCCCGGCCGCGCCGGC
CGCGTCCGGCGCGCAGCCGGTGCTGTTCGACACGGCGCTCGGCGGGCTCGCGATTCGCGCGGTGGCATACACGCGCGAGC
TGTACAACGCGGGCAACACGGAAACGGTGACGGTTGTCGTCGGCAAGACGCAGACCTCGCGGCAGATGATGATCGCGGCG
ATCTGGCATCCGCAGCTCTGGCGGCTCGCGCTGATGCTCGCGCTCGCGATGGCGCTCGTCTATCTCGGGCTCACGTTCGA
GCTGCGGCCGTTGATGAAGCTGAAAGAAGACGTCGCGGACCGCGGGCCGATGGAGCTCGAGCCGATCCGCACCGAGCGGC
TGCATTTCGAGCTGCGGCCGATCGTCGACGCGATCAACCAGTGCATCGCGCGGCTGAACCTGCACGCGGCGACGCAGCGA
CGCTTCATCGCCGACGCCGCGCACCAGCTGCGCACGCCGATCGCGGTGATCGACACGCAGATCCAGTGCGCGCGGCAGCG
CGAGAACGGCGACGCGGCGCTCGCCGCGCTGCTCGCGTCGATGCAGCGCAGCAGCCGCCGGATGGCGGACGTCACCGACA
AGCTGCTGCTGCTCGCGCACGCGGAAGCCGCGTCGCCCGCGCGGCTCGCCGCGCGCGTCGACATCGCGGCCGTCGTGTCG
GGCGTGCTCGAGGAGGCGATCGTGCTCGCCGAGCGGCGGCGCATCGATCTCGGCGCGGAGCTCGACGACGATCTGCAGGT
GGCCGGCAGCGAAAGCCTGCTGTCGGCGCTGCTGATGAATCTCGTCGACAACGCGGTGCGCTATGCGCATGAAGGCGGAC
GCGTGACGGTGAGCGCGCGGCGCGACGGCGACGCGGTGGTGCTCGAGGTCGTCGACGACGGCCCGGGCATCCCGGCCGAG
GCGCGGCCGCACGTGTTCAAGCGCTTCTATCGCGTCGCGAGGGACGAGGAAGGCACGGGTCTCGGGCTCGCGATCGTCGA
GGAGATCGCGCAGTCGCACGGCGGCGCGGTGTCGCTTGCCACAGGCCCCGGCAACCGGGGCGTGAGGATGACCGTGCGGC
TGCCCGCCTATCGCAATTGA

Upstream 100 bases:

>100_bases
AGTGGCGGCCCGCCGCGTTCTGAAGACGATGCATCAACGAAACGGCGCATCTTCGGTGCGCCGTTTCGTTTTGGGCTCTG
GAGTGTTGGGGGATAACGGC

Downstream 100 bases:

>100_bases
GAGAGCCCCGATGAAACTGCTGCTCGTGGAAGACAACGCGGAACTCGCGCACTGGATCGTCGATCTGCTGCGCGGCGAAG
GCTTCGGCGTCGATTCGGCG

Product: sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 458

Protein sequence:

>459_residues
MSHSLRGRLLWWLLLPLAVFVAIAGAMSYDTARKTADLVQDGALVASARVIAEDVDWEGGALVANVPPAALELFASPAQD
HVYYKVRTGGGRLLAGNPDLDGPAAPAASGAQPVLFDTALGGLAIRAVAYTRELYNAGNTETVTVVVGKTQTSRQMMIAA
IWHPQLWRLALMLALAMALVYLGLTFELRPLMKLKEDVADRGPMELEPIRTERLHFELRPIVDAINQCIARLNLHAATQR
RFIADAAHQLRTPIAVIDTQIQCARQRENGDAALAALLASMQRSSRRMADVTDKLLLLAHAEAASPARLAARVDIAAVVS
GVLEEAIVLAERRRIDLGAELDDDLQVAGSESLLSALLMNLVDNAVRYAHEGGRVTVSARRDGDAVVLEVVDDGPGIPAE
ARPHVFKRFYRVARDEEGTGLGLAIVEEIAQSHGGAVSLATGPGNRGVRMTVRLPAYRN

Sequences:

>Translated_459_residues
MSHSLRGRLLWWLLLPLAVFVAIAGAMSYDTARKTADLVQDGALVASARVIAEDVDWEGGALVANVPPAALELFASPAQD
HVYYKVRTGGGRLLAGNPDLDGPAAPAASGAQPVLFDTALGGLAIRAVAYTRELYNAGNTETVTVVVGKTQTSRQMMIAA
IWHPQLWRLALMLALAMALVYLGLTFELRPLMKLKEDVADRGPMELEPIRTERLHFELRPIVDAINQCIARLNLHAATQR
RFIADAAHQLRTPIAVIDTQIQCARQRENGDAALAALLASMQRSSRRMADVTDKLLLLAHAEAASPARLAARVDIAAVVS
GVLEEAIVLAERRRIDLGAELDDDLQVAGSESLLSALLMNLVDNAVRYAHEGGRVTVSARRDGDAVVLEVVDDGPGIPAE
ARPHVFKRFYRVARDEEGTGLGLAIVEEIAQSHGGAVSLATGPGNRGVRMTVRLPAYRN
>Mature_458_residues
SHSLRGRLLWWLLLPLAVFVAIAGAMSYDTARKTADLVQDGALVASARVIAEDVDWEGGALVANVPPAALELFASPAQDH
VYYKVRTGGGRLLAGNPDLDGPAAPAASGAQPVLFDTALGGLAIRAVAYTRELYNAGNTETVTVVVGKTQTSRQMMIAAI
WHPQLWRLALMLALAMALVYLGLTFELRPLMKLKEDVADRGPMELEPIRTERLHFELRPIVDAINQCIARLNLHAATQRR
FIADAAHQLRTPIAVIDTQIQCARQRENGDAALAALLASMQRSSRRMADVTDKLLLLAHAEAASPARLAARVDIAAVVSG
VLEEAIVLAERRRIDLGAELDDDLQVAGSESLLSALLMNLVDNAVRYAHEGGRVTVSARRDGDAVVLEVVDDGPGIPAEA
RPHVFKRFYRVARDEEGTGLGLAIVEEIAQSHGGAVSLATGPGNRGVRMTVRLPAYRN

Specific function: Member of the two-component regulatory system rssA/rssB involved in regulation of swarming motility which has been shown to be inhibited by saturated fatty acids. RssA/rssB regulates cellular fatty acid composition, hemolysin production and cell surface t

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1789403, Length=301, Percent_Identity=32.2259136212625, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1786600, Length=221, Percent_Identity=32.579185520362, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1790551, Length=287, Percent_Identity=31.3588850174216, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1786783, Length=246, Percent_Identity=34.1463414634146, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1790346, Length=244, Percent_Identity=30.7377049180328, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788393, Length=250, Percent_Identity=30.4, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1790861, Length=279, Percent_Identity=28.673835125448, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI145693157, Length=232, Percent_Identity=28.0172413793103, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788279, Length=320, Percent_Identity=25.3125, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787374, Length=302, Percent_Identity=24.1721854304636, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1787894, Length=311, Percent_Identity=27.3311897106109, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790436, Length=214, Percent_Identity=29.4392523364486, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789808, Length=295, Percent_Identity=28.4745762711864, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1788549, Length=225, Percent_Identity=25.7777777777778, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI48994928, Length=231, Percent_Identity=25.1082251082251, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082128, Length=249, Percent_Identity=24.8995983935743, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788713, Length=229, Percent_Identity=24.8908296943231, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87081816, Length=125, Percent_Identity=35.2, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786912, Length=103, Percent_Identity=34.9514563106796, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1789149, Length=234, Percent_Identity=25.6410256410256, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 49369; Mature: 49238

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSLRGRLLWWLLLPLAVFVAIAGAMSYDTARKTADLVQDGALVASARVIAEDVDWEGG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
ALVANVPPAALELFASPAQDHVYYKVRTGGGRLLAGNPDLDGPAAPAASGAQPVLFDTAL
EEEECCCHHHHHHHCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEHHHH
GGLAIRAVAYTRELYNAGNTETVTVVVGKTQTSRQMMIAAIWHPQLWRLALMLALAMALV
HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHEEEEEECCHHHHHHHHHHHHHHHHH
YLGLTFELRPLMKLKEDVADRGPMELEPIRTERLHFELRPIVDAINQCIARLNLHAATQR
HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFIADAAHQLRTPIAVIDTQIQCARQRENGDAALAALLASMQRSSRRMADVTDKLLLLAH
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
AEAASPARLAARVDIAAVVSGVLEEAIVLAERRRIDLGAELDDDLQVAGSESLLSALLMN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHH
LVDNAVRYAHEGGRVTVSARRDGDAVVLEVVDDGPGIPAEARPHVFKRFYRVARDEEGTG
HHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
LGLAIVEEIAQSHGGAVSLATGPGNRGVRMTVRLPAYRN
CHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCC
>Mature Secondary Structure 
SHSLRGRLLWWLLLPLAVFVAIAGAMSYDTARKTADLVQDGALVASARVIAEDVDWEGG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
ALVANVPPAALELFASPAQDHVYYKVRTGGGRLLAGNPDLDGPAAPAASGAQPVLFDTAL
EEEECCCHHHHHHHCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEHHHH
GGLAIRAVAYTRELYNAGNTETVTVVVGKTQTSRQMMIAAIWHPQLWRLALMLALAMALV
HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHEEEEEECCHHHHHHHHHHHHHHHHH
YLGLTFELRPLMKLKEDVADRGPMELEPIRTERLHFELRPIVDAINQCIARLNLHAATQR
HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFIADAAHQLRTPIAVIDTQIQCARQRENGDAALAALLASMQRSSRRMADVTDKLLLLAH
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
AEAASPARLAARVDIAAVVSGVLEEAIVLAERRRIDLGAELDDDLQVAGSESLLSALLMN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHH
LVDNAVRYAHEGGRVTVSARRDGDAVVLEVVDDGPGIPAEARPHVFKRFYRVARDEEGTG
HHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
LGLAIVEEIAQSHGGAVSLATGPGNRGVRMTVRLPAYRN
CHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA