Click here to switch to the map view.

The map label for this gene is 126454428

Identifier: 126454428

GI number: 126454428

Start: 40500

End: 41660

Strand: Direct

Name: 126454428

Synonym: BURPS1106A_0044

Alternate gene names: NA

Gene position: 40500-41660 (Clockwise)

Preceding gene: 126451555

Following gene: 126453561

Centisome position: 1.02

GC content: 65.2

Gene sequence:

>1161_bases
ATGGCGGTCAACACGATATCGGAGGGGACGATCTTGAAACGACAATACCTGGCACTTTCCATCGCGACGGCCGCCTGCGC
GGCGCCGCAAGCGCACGCGCAGTCGAGCGTCCAGCTCTACGGGCTCATCGACCTGAGCGTTCCGACCTATCGCTCGCACG
CGAACGCGAAGGGCGATCACGTGATCGGCATGGGGCTCGGCGGCGAGCCGTGGTTCAGCGGCAGCCGCTGGGGGCTGAAG
GGCGCGGAGGACATCGGCGGCGGCACGAAGGTGATCTTCCGGCTCGAAAGCGAATACACGGTAGCCGACGGCAACATGGA
GGACCCGGGCCAGATCTTCGACCGCGATGCGTGGGTCGGCGTCGAAAACGACACGTTCGGCAAGCTCACCGCGGGCTTCC
AGAACACGATCGCGCGCGACGCGGCGGCGATCTACGGCGACCCTTACGGCTCGGCGAAGCTCACGACCGAGGAAGGCGGC
TGGACGAACGCGAACAACTTCAAGCAGATGATCTTCTACGCGGCCGGTGCGACGGGCACGCGCTACAACAACGGCCTCGC
GTGGAAGAAGCTGTTCGGCAACGGCATCTTCGCGAGCGCGGGCTACGCGTTCAGCAATTCGACGAGCTTCGGGCAGAACT
CGACCTATCAGGTCGCGCTCGGCTACAACGGCGGCCCGTTCAACGTGTCGGGCTTCTTCAGCCACGTGAACCACGCGGGC
TACGCGAACAAGTCGTTCTCGGTCGGCGGCAACTACACGTTCGACATCTTCCGCGTGAACGCCGGCTACTTCCGCTACCT
GGGCGATCAGGGCGCGCTCGGCCAGCGCCAGGACAACGCGTGGACGGTGTCGTTCAAGGTCGCGCCGAAGGGCGCGCTCG
ACTACGAGCTCGGCTATCAGCAGATGCGCGTGCACAACGCCGCGTACAACAGCGACGGCAACGTGCCGAACGCGAACATC
GGCGACTTCAGCCTCACGTCGGGCGTCGGCAACGGCTTCAAGGAAACGCTGTACGGCTCGGTGTTCTACCACCTGTCGAA
GCGCACCGAGCTGTACCTCGCCGGCGACTACATGCGCCTGCACGGCGGCTATACGGTCGCGTCCACGCACGGCGCGACCA
ATCAGCTCGAGCTGACGACCGGCATCCGCACGCGGTTCTGA

Upstream 100 bases:

>100_bases
GCGCGAAAGCGCCGCGAAGGATTGCGCCCACTACGATGGCGTGGCCGTTCGACGCGCATCGCGCAGCGTCTGCGCAGCCG
ACGCTGCGTACTACGAAAGA

Downstream 100 bases:

>100_bases
TCCGCCGCGCGGGGCGGCCGGCCGACGCGTCGGCCGTGCCGCCCTTCGCGCTCCCCGCCCCGCCCGCCTGTTCGGTCTTT
CCCGCCTTTTTCGCCGCGCC

Product: putative porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MAVNTISEGTILKRQYLALSIATAACAAPQAHAQSSVQLYGLIDLSVPTYRSHANAKGDHVIGMGLGGEPWFSGSRWGLK
GAEDIGGGTKVIFRLESEYTVADGNMEDPGQIFDRDAWVGVENDTFGKLTAGFQNTIARDAAAIYGDPYGSAKLTTEEGG
WTNANNFKQMIFYAAGATGTRYNNGLAWKKLFGNGIFASAGYAFSNSTSFGQNSTYQVALGYNGGPFNVSGFFSHVNHAG
YANKSFSVGGNYTFDIFRVNAGYFRYLGDQGALGQRQDNAWTVSFKVAPKGALDYELGYQQMRVHNAAYNSDGNVPNANI
GDFSLTSGVGNGFKETLYGSVFYHLSKRTELYLAGDYMRLHGGYTVASTHGATNQLELTTGIRTRF

Sequences:

>Translated_386_residues
MAVNTISEGTILKRQYLALSIATAACAAPQAHAQSSVQLYGLIDLSVPTYRSHANAKGDHVIGMGLGGEPWFSGSRWGLK
GAEDIGGGTKVIFRLESEYTVADGNMEDPGQIFDRDAWVGVENDTFGKLTAGFQNTIARDAAAIYGDPYGSAKLTTEEGG
WTNANNFKQMIFYAAGATGTRYNNGLAWKKLFGNGIFASAGYAFSNSTSFGQNSTYQVALGYNGGPFNVSGFFSHVNHAG
YANKSFSVGGNYTFDIFRVNAGYFRYLGDQGALGQRQDNAWTVSFKVAPKGALDYELGYQQMRVHNAAYNSDGNVPNANI
GDFSLTSGVGNGFKETLYGSVFYHLSKRTELYLAGDYMRLHGGYTVASTHGATNQLELTTGIRTRF
>Mature_385_residues
AVNTISEGTILKRQYLALSIATAACAAPQAHAQSSVQLYGLIDLSVPTYRSHANAKGDHVIGMGLGGEPWFSGSRWGLKG
AEDIGGGTKVIFRLESEYTVADGNMEDPGQIFDRDAWVGVENDTFGKLTAGFQNTIARDAAAIYGDPYGSAKLTTEEGGW
TNANNFKQMIFYAAGATGTRYNNGLAWKKLFGNGIFASAGYAFSNSTSFGQNSTYQVALGYNGGPFNVSGFFSHVNHAGY
ANKSFSVGGNYTFDIFRVNAGYFRYLGDQGALGQRQDNAWTVSFKVAPKGALDYELGYQQMRVHNAAYNSDGNVPNANIG
DFSLTSGVGNGFKETLYGSVFYHLSKRTELYLAGDYMRLHGGYTVASTHGATNQLELTTGIRTRF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41575; Mature: 41444

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVNTISEGTILKRQYLALSIATAACAAPQAHAQSSVQLYGLIDLSVPTYRSHANAKGDH
CCCCCCCCCCEEEHHEEEEEEHHHHHCCCHHHCCCCEEEEEEEEECCCCCCCCCCCCCCE
VIGMGLGGEPWFSGSRWGLKGAEDIGGGTKVIFRLESEYTVADGNMEDPGQIFDRDAWVG
EEEECCCCCCCCCCCCCCCCCCHHCCCCEEEEEEEECCEEEECCCCCCCHHHHCCCEEEE
VENDTFGKLTAGFQNTIARDAAAIYGDPYGSAKLTTEEGGWTNANNFKQMIFYAAGATGT
CCCCCCCHHHCCHHHHHHHHHHHEECCCCCCCEEEECCCCCCCCCCCEEEEEEEECCCCC
RYNNGLAWKKLFGNGIFASAGYAFSNSTSFGQNSTYQVALGYNGGPFNVSGFFSHVNHAG
CCCCCCEEEHHHCCCEEEECCEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCC
YANKSFSVGGNYTFDIFRVNAGYFRYLGDQGALGQRQDNAWTVSFKVAPKGALDYELGYQ
CCCCEEECCCCEEEEEEEECCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCHHCCHH
QMRVHNAAYNSDGNVPNANIGDFSLTSGVGNGFKETLYGSVFYHLSKRTELYLAGDYMRL
HHEEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHEEEECCCEEEEEEECEEEE
HGGYTVASTHGATNQLELTTGIRTRF
ECCEEEEECCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
AVNTISEGTILKRQYLALSIATAACAAPQAHAQSSVQLYGLIDLSVPTYRSHANAKGDH
CCCCCCCCCEEEHHEEEEEEHHHHHCCCHHHCCCCEEEEEEEEECCCCCCCCCCCCCCE
VIGMGLGGEPWFSGSRWGLKGAEDIGGGTKVIFRLESEYTVADGNMEDPGQIFDRDAWVG
EEEECCCCCCCCCCCCCCCCCCHHCCCCEEEEEEEECCEEEECCCCCCCHHHHCCCEEEE
VENDTFGKLTAGFQNTIARDAAAIYGDPYGSAKLTTEEGGWTNANNFKQMIFYAAGATGT
CCCCCCCHHHCCHHHHHHHHHHHEECCCCCCCEEEECCCCCCCCCCCEEEEEEEECCCCC
RYNNGLAWKKLFGNGIFASAGYAFSNSTSFGQNSTYQVALGYNGGPFNVSGFFSHVNHAG
CCCCCCEEEHHHCCCEEEECCEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCC
YANKSFSVGGNYTFDIFRVNAGYFRYLGDQGALGQRQDNAWTVSFKVAPKGALDYELGYQ
CCCCEEECCCCEEEEEEEECCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCHHCCHH
QMRVHNAAYNSDGNVPNANIGDFSLTSGVGNGFKETLYGSVFYHLSKRTELYLAGDYMRL
HHEEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHEEEECCCEEEEEEECEEEE
HGGYTVASTHGATNQLELTTGIRTRF
ECCEEEEECCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]