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The map label for this gene is ydfH [H]

Identifier: 126445735

GI number: 126445735

Start: 1586324

End: 1587049

Strand: Direct

Name: ydfH [H]

Synonym: BMA10247_A1647

Alternate gene names: 126445735

Gene position: 1586324-1587049 (Clockwise)

Preceding gene: 126446943

Following gene: 126447832

Centisome position: 67.43

GC content: 70.11

Gene sequence:

>726_bases
ATGAGCGACAAGGAACCCGCGGAAGACGTCGTCGTCGCGGCGCTGAACGGCTTCGTGCTCGACGCCGAGCGCTCGTACAC
GCAACAGGTGCACGCGCTGCTGCGCAACGCGATCGTGCGCGGCGCGCTGCCGCCGCGCACCGCGCTGTCGGAGGCGGTCA
TCTCGGCCACGATCGACGTGAGCCGCACGCCCGTGCGCGAAGCGCTCGCGCAGCTCGCCGACGAGCGGCTCGTGCAGATC
TACCGCAAGGTCGGCACGCTCGTCGCGCCGATCTCGGTGTCGATGCTAGAGGAAGGCCGCTTCGCGCGCGGCACGCTCGA
ATGCGCGAACCACGTCGATCTCGCGCAGAAGATCACGCCGGCGCAGCTCGCGGAGCTCGCCCGCCTCGTCGACGCGCAGC
GCGACGCGGTGGCCGCGCACGACGTCGACACGTTCTTCACGCTCGACGAGACGATGCACGGCCGGATGTTCGAATTCGCC
GGCCGCCCGCACGTGTGGGCCATGCTGCAACCGATGAAACGGAAGTTCGACCGCGTGCGCTGGCTGCTGCTCGATCGCGT
CGAAGACCACGCGCGCCGCGCGCTGCACGAGCACGAGCAGATCCTCGCGCACATCGCGGCGCGCAACATGGCGCTGCTCG
GCGCATCGGTCGCGGTGCACGTCGACCGCGTGAACGCCCACTTGCCCGAGGTGCGCGAGCGCGCGCCCCACTACTTTGTC
GACTGA

Upstream 100 bases:

>100_bases
TTATCGGTGTAAACGCTACATCCGCTTTCATAGCCATCGCATGTACCATGGTAGATAGATGAATTGCACCCTGCCTCGCC
CCCGAATGAAGAGCCCATTG

Downstream 100 bases:

>100_bases
CCCCCTCACCGGAGAAACCGCGTGAAAATCGAACGGCTGAACATCATCGTCACCTGCCCCGGCCGGAATTTCGTGACGGT
CAAGATCGTCACCGACGAAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSDKEPAEDVVVAALNGFVLDAERSYTQQVHALLRNAIVRGALPPRTALSEAVISATIDVSRTPVREALAQLADERLVQI
YRKVGTLVAPISVSMLEEGRFARGTLECANHVDLAQKITPAQLAELARLVDAQRDAVAAHDVDTFFTLDETMHGRMFEFA
GRPHVWAMLQPMKRKFDRVRWLLLDRVEDHARRALHEHEQILAHIAARNMALLGASVAVHVDRVNAHLPEVRERAPHYFV
D

Sequences:

>Translated_241_residues
MSDKEPAEDVVVAALNGFVLDAERSYTQQVHALLRNAIVRGALPPRTALSEAVISATIDVSRTPVREALAQLADERLVQI
YRKVGTLVAPISVSMLEEGRFARGTLECANHVDLAQKITPAQLAELARLVDAQRDAVAAHDVDTFFTLDETMHGRMFEFA
GRPHVWAMLQPMKRKFDRVRWLLLDRVEDHARRALHEHEQILAHIAARNMALLGASVAVHVDRVNAHLPEVRERAPHYFV
D
>Mature_240_residues
SDKEPAEDVVVAALNGFVLDAERSYTQQVHALLRNAIVRGALPPRTALSEAVISATIDVSRTPVREALAQLADERLVQIY
RKVGTLVAPISVSMLEEGRFARGTLECANHVDLAQKITPAQLAELARLVDAQRDAVAAHDVDTFFTLDETMHGRMFEFAG
RPHVWAMLQPMKRKFDRVRWLLLDRVEDHARRALHEHEQILAHIAARNMALLGASVAVHVDRVNAHLPEVRERAPHYFVD

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=220, Percent_Identity=30, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26993; Mature: 26862

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKEPAEDVVVAALNGFVLDAERSYTQQVHALLRNAIVRGALPPRTALSEAVISATIDV
CCCCCHHHHHHHHHHHCEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
SRTPVREALAQLADERLVQIYRKVGTLVAPISVSMLEEGRFARGTLECANHVDLAQKITP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCH
AQLAELARLVDAQRDAVAAHDVDTFFTLDETMHGRMFEFAGRPHVWAMLQPMKRKFDRVR
HHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHH
WLLLDRVEDHARRALHEHEQILAHIAARNMALLGASVAVHVDRVNAHLPEVRERAPHYFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHCCCHHHHHHCCCCCC
D
C
>Mature Secondary Structure 
SDKEPAEDVVVAALNGFVLDAERSYTQQVHALLRNAIVRGALPPRTALSEAVISATIDV
CCCCHHHHHHHHHHHCEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
SRTPVREALAQLADERLVQIYRKVGTLVAPISVSMLEEGRFARGTLECANHVDLAQKITP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCH
AQLAELARLVDAQRDAVAAHDVDTFFTLDETMHGRMFEFAGRPHVWAMLQPMKRKFDRVR
HHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHH
WLLLDRVEDHARRALHEHEQILAHIAARNMALLGASVAVHVDRVNAHLPEVRERAPHYFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHCCCHHHHHHCCCCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]