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The map label for this gene is ycdC [C]

Identifier: 126446943

GI number: 126446943

Start: 1577951

End: 1578649

Strand: Direct

Name: ycdC [C]

Synonym: BMA10247_A1638

Alternate gene names: 126446943

Gene position: 1577951-1578649 (Clockwise)

Preceding gene: 126446303

Following gene: 126445735

Centisome position: 67.07

GC content: 62.52

Gene sequence:

>699_bases
ATGCCGCCGTCCGATCACGCCAAAATGAAACAAGGAAGCAAGGCCGCAGCGCCCGACGCCGAAGCGCGGCGAGACGAGGC
GCGCCGCAAATACGACCCCGAGCAGACGAAGCGCAATATTCTCGACGTCGCCACGCAGGAATTCTCCGCGATGGGACTGT
CGGGGGCGCGCGTCGACGCGATCGCCGAACGTACGAACACGACGAAGCGGATGCTCTATTACTACTTCGACAGCAAGGAA
GGGTTGTACGAGGCAGTGCTGGAGAAGGTCTACGGCGACATCCGCACGCTCGAGCGCGAACTGAACGTCGGCGAGCTGGA
GCCGCGCGAAGGGCTGAGCCGGCTCGTCGAATTCACGTTCGACTATCACGACAGGCATCGCGATTTCGTGCGCCTCGTGA
CGATCGAGAACATTCACGGCGCGAAATACATCGAGCAGTTGAAGTCGTTCAAGAACCGCAACGTCAGCATCATCAAGACG
CTCGAGGAACTGCTCGCGCGCGGCGTCGAAAGCGGCGTGTTCCGCGACGACGTCGATCCGTTCGATCTGCATCTGCTCAT
CAGCTCGTTCTGCTTTCATCGCGTCGCGAACCGCTATACGTTCGGCACGGCGTTCGGCCGCGATCCGTCGTCGCCGCGGC
TGCGCGCGCGGCATCGGGCGATGATCACCGACACCGTGCTGCGCTACGTCGCCCGCTGA

Upstream 100 bases:

>100_bases
GCGCGCCGCTGCGCACGCGCCGGCCAGCCCTTTCGTCAGCGCCTTTAGAGCCCGGAGTCGGGCAAAAGCCGCCTGGGGCG
CGTGCTAGAATGCGCCGACC

Downstream 100 bases:

>100_bases
TCGCACGCCGGCTCGGGCGCGATGCCGCCCGAAGCAATCGCCGCGCGGTGGTCGGCGGCGGCTGCGGCGCGCCGGGCTCA
CCGGTCCGCGCATCGGGCTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MPPSDHAKMKQGSKAAAPDAEARRDEARRKYDPEQTKRNILDVATQEFSAMGLSGARVDAIAERTNTTKRMLYYYFDSKE
GLYEAVLEKVYGDIRTLERELNVGELEPREGLSRLVEFTFDYHDRHRDFVRLVTIENIHGAKYIEQLKSFKNRNVSIIKT
LEELLARGVESGVFRDDVDPFDLHLLISSFCFHRVANRYTFGTAFGRDPSSPRLRARHRAMITDTVLRYVAR

Sequences:

>Translated_232_residues
MPPSDHAKMKQGSKAAAPDAEARRDEARRKYDPEQTKRNILDVATQEFSAMGLSGARVDAIAERTNTTKRMLYYYFDSKE
GLYEAVLEKVYGDIRTLERELNVGELEPREGLSRLVEFTFDYHDRHRDFVRLVTIENIHGAKYIEQLKSFKNRNVSIIKT
LEELLARGVESGVFRDDVDPFDLHLLISSFCFHRVANRYTFGTAFGRDPSSPRLRARHRAMITDTVLRYVAR
>Mature_231_residues
PPSDHAKMKQGSKAAAPDAEARRDEARRKYDPEQTKRNILDVATQEFSAMGLSGARVDAIAERTNTTKRMLYYYFDSKEG
LYEAVLEKVYGDIRTLERELNVGELEPREGLSRLVEFTFDYHDRHRDFVRLVTIENIHGAKYIEQLKSFKNRNVSIIKTL
EELLARGVESGVFRDDVDPFDLHLLISSFCFHRVANRYTFGTAFGRDPSSPRLRARHRAMITDTVLRYVAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26823; Mature: 26691

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPSDHAKMKQGSKAAAPDAEARRDEARRKYDPEQTKRNILDVATQEFSAMGLSGARVDA
CCCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
IAERTNTTKRMLYYYFDSKEGLYEAVLEKVYGDIRTLERELNVGELEPREGLSRLVEFTF
HHHHHCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
DYHDRHRDFVRLVTIENIHGAKYIEQLKSFKNRNVSIIKTLEELLARGVESGVFRDDVDP
HHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
FDLHLLISSFCFHRVANRYTFGTAFGRDPSSPRLRARHRAMITDTVLRYVAR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PPSDHAKMKQGSKAAAPDAEARRDEARRKYDPEQTKRNILDVATQEFSAMGLSGARVDA
CCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
IAERTNTTKRMLYYYFDSKEGLYEAVLEKVYGDIRTLERELNVGELEPREGLSRLVEFTF
HHHHHCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
DYHDRHRDFVRLVTIENIHGAKYIEQLKSFKNRNVSIIKTLEELLARGVESGVFRDDVDP
HHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
FDLHLLISSFCFHRVANRYTFGTAFGRDPSSPRLRARHRAMITDTVLRYVAR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA