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The map label for this gene is cydB [H]

Identifier: 126442400

GI number: 126442400

Start: 1902495

End: 1903505

Strand: Reverse

Name: cydB [H]

Synonym: BURPS668_A1965

Alternate gene names: 126442400

Gene position: 1903505-1902495 (Counterclockwise)

Preceding gene: 126443658

Following gene: 126445205

Centisome position: 60.86

GC content: 69.44

Gene sequence:

>1011_bases
ATGCTGCTTGATCTCGTGCCGTTGTGGGCGGGCGTGCTCGCGCTGTCGGTGCTGATGTACGTGCTGCTCGACGGCTTCGA
TCTCGGCGTGGGGATGCTGTTTTTCTTTCACCGCGACGAAGCCGAGCGCGACCGGATGATCGCGTCGGTGTCGCCCGTCT
GGGACTTCAACGAGACGTGGCTCGTGCTCGGCGGCACGCTGCTGCTCGCCGCGTTCCCCGGCGCGTTCTCGGTCGTCGTG
CCGGCCGTTTATTTCCCGGTGCTGGCGATGCTGCTCGGCCTGCTGTTTCGCGGCGTCGCGTTCGAGTTTCGCGGCGTCGC
GGGCGCGCGCAAGACGGTATGGAGCCGCGCGTTCGCGATCGGCTCGCTCGTCGCGACAGCCGCGCAAGGCGTGGTGCTCG
GGATGTTCGTGCAGGGCTTCGAGGTCGCGCACGGCCGCTTCGTCGGCACGAGCTGGGATTGGGTCGCGCCGTTTCCGCTC
GTGACCGGCGCGGGGCTCGTTGCCGGCTATCTGCTGCTGGGCGCGACGTGGCTCGTGCTGAAGACCGACGGCCCGCTGCA
GCGCGCGGCGCGCGTCGCGGCCGCGCGCGCGCTCGTGTGCGTGATCGCGTTCATCGCCGTGGTGAGCGTGTGGACGCCGC
TTGCCGACGCGCGCATCGCCGCGCGCTGGTTCGCGTGGCCGAACCTGCTGTTCTTCTCGCCGGTGCCGGTGCTGACCGCC
GCGCTCGCGTGGCTTGCCGCGCGCAGCCTGCGGCGTGGCGGCGAAGCGTTGCCGTTCGTCGCGTCGATCGGCCTGTTCTT
CCTTGCGTTTTCCGGGCTCACGATCAGCCTGTGGCCGCACGTCGCGCCGCCGTCGATCACGCTGTGGTCGGCCGCGTCGG
CGAGCGCGTCGCAGGAATTCCTGATGATCGGCACCGCGTTCATGCTGCCGGTGCTGCTGTTCTACGTGTGCTGGTCATAT
TGGGTGTTCCGCGGCAAGGTGCGCGGCGACGTCGGCTACGAGCACATGTGA

Upstream 100 bases:

>100_bases
TGCGCGGCGGAGCCCGAAGCGGCGGCCGTGCCGGGCCGGCGCTCCGCGCGGCCGCTGTCCGCGGTGTCCGGCGGCGCGGC
GGGGACGACGGAGCGAAGCG

Downstream 100 bases:

>100_bases
CGCGGCGCGCCGTCCGTCTCGCGCGGGCGGCGCGCCTTCCGCGCTCGCGAGCCGGGCGACGGTGGCGCGCGTGGGCGTTG
TCACAGGCACGCACAGGCAC

Product: cytochrome D ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-II oxidase subunit II [H]

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MLLDLVPLWAGVLALSVLMYVLLDGFDLGVGMLFFFHRDEAERDRMIASVSPVWDFNETWLVLGGTLLLAAFPGAFSVVV
PAVYFPVLAMLLGLLFRGVAFEFRGVAGARKTVWSRAFAIGSLVATAAQGVVLGMFVQGFEVAHGRFVGTSWDWVAPFPL
VTGAGLVAGYLLLGATWLVLKTDGPLQRAARVAAARALVCVIAFIAVVSVWTPLADARIAARWFAWPNLLFFSPVPVLTA
ALAWLAARSLRRGGEALPFVASIGLFFLAFSGLTISLWPHVAPPSITLWSAASASASQEFLMIGTAFMLPVLLFYVCWSY
WVFRGKVRGDVGYEHM

Sequences:

>Translated_336_residues
MLLDLVPLWAGVLALSVLMYVLLDGFDLGVGMLFFFHRDEAERDRMIASVSPVWDFNETWLVLGGTLLLAAFPGAFSVVV
PAVYFPVLAMLLGLLFRGVAFEFRGVAGARKTVWSRAFAIGSLVATAAQGVVLGMFVQGFEVAHGRFVGTSWDWVAPFPL
VTGAGLVAGYLLLGATWLVLKTDGPLQRAARVAAARALVCVIAFIAVVSVWTPLADARIAARWFAWPNLLFFSPVPVLTA
ALAWLAARSLRRGGEALPFVASIGLFFLAFSGLTISLWPHVAPPSITLWSAASASASQEFLMIGTAFMLPVLLFYVCWSY
WVFRGKVRGDVGYEHM
>Mature_336_residues
MLLDLVPLWAGVLALSVLMYVLLDGFDLGVGMLFFFHRDEAERDRMIASVSPVWDFNETWLVLGGTLLLAAFPGAFSVVV
PAVYFPVLAMLLGLLFRGVAFEFRGVAGARKTVWSRAFAIGSLVATAAQGVVLGMFVQGFEVAHGRFVGTSWDWVAPFPL
VTGAGLVAGYLLLGATWLVLKTDGPLQRAARVAAARALVCVIAFIAVVSVWTPLADARIAARWFAWPNLLFFSPVPVLTA
ALAWLAARSLRRGGEALPFVASIGLFFLAFSGLTISLWPHVAPPSITLWSAASASASQEFLMIGTAFMLPVLLFYVCWSY
WVFRGKVRGDVGYEHM

Specific function: Cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli CydB [H]

Homologues:

Organism=Escherichia coli, GI1787213, Length=361, Percent_Identity=28.5318559556787, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1786954, Length=348, Percent_Identity=27.8735632183908, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36409; Mature: 36409

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLDLVPLWAGVLALSVLMYVLLDGFDLGVGMLFFFHRDEAERDRMIASVSPVWDFNETW
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCH
LVLGGTLLLAAFPGAFSVVVPAVYFPVLAMLLGLLFRGVAFEFRGVAGARKTVWSRAFAI
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
GSLVATAAQGVVLGMFVQGFEVAHGRFVGTSWDWVAPFPLVTGAGLVAGYLLLGATWLVL
HHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEE
KTDGPLQRAARVAAARALVCVIAFIAVVSVWTPLADARIAARWFAWPNLLFFSPVPVLTA
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHCCCHHHHHH
ALAWLAARSLRRGGEALPFVASIGLFFLAFSGLTISLWPHVAPPSITLWSAASASASQEF
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCEEEECCCCCCCCCHH
LMIGTAFMLPVLLFYVCWSYWVFRGKVRGDVGYEHM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLLDLVPLWAGVLALSVLMYVLLDGFDLGVGMLFFFHRDEAERDRMIASVSPVWDFNETW
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCH
LVLGGTLLLAAFPGAFSVVVPAVYFPVLAMLLGLLFRGVAFEFRGVAGARKTVWSRAFAI
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
GSLVATAAQGVVLGMFVQGFEVAHGRFVGTSWDWVAPFPLVTGAGLVAGYLLLGATWLVL
HHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEE
KTDGPLQRAARVAAARALVCVIAFIAVVSVWTPLADARIAARWFAWPNLLFFSPVPVLTA
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHCCCHHHHHH
ALAWLAARSLRRGGEALPFVASIGLFFLAFSGLTISLWPHVAPPSITLWSAASASASQEF
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCEEEECCCCCCCCCHH
LMIGTAFMLPVLLFYVCWSYWVFRGKVRGDVGYEHM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658595; 8905232; 9278503; 8626304 [H]