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The map label for this gene is cydA [H]

Identifier: 126443658

GI number: 126443658

Start: 1903495

End: 1904940

Strand: Reverse

Name: cydA [H]

Synonym: BURPS668_A1966

Alternate gene names: 126443658

Gene position: 1904940-1903495 (Counterclockwise)

Preceding gene: 126444177

Following gene: 126442400

Centisome position: 60.91

GC content: 70.26

Gene sequence:

>1446_bases
ATGATGGAAATCGACGCCTTGCTCCTGTCGCGCCTTCAGTTCGCGTGGGTCATCGCGCTGCACATCCTGCTGCCCGCGCT
CACCGTGGGGCTCGCGTGCTACGTCGCGACGCTCGAGGCGCTCGCGTGGGCGACGGGCCGCGACGTCTACCGGCGTCTTT
CCGCGTTCTGGCTGCGGATCTTCGCGGTGTCGTTCGGGATGGGCGTGGTGTCGGGGATCGTGATGCCGTTCCAGTTCGGC
ACGAACTGGAGCCGCTTCGTCGCGGCGACGTCGAACGTGATCGGCGGCTTCATGGCGTACGAGGTGCTGACCGCGTTCTT
CCTCGAATCGGCGTTCCTCGGCGTGCTGCTGTTCGGCCGCCGGCGCGTGCCGCAATGGGCGCACGCGCTGGCGGCGGCGC
TTGTCGCGCTCGGCACGCTGCTGTCGTCGTTCTGGATTCTCGCCGTGAACAGCTGGATGCAGACGCCGAGCGGCTACCGG
TTCGTCGACGGGCGCTTCTATCCGGAGAGCATCGTCGCGGTGCTGCTGAGCCCGTCGTTTCCGTACCGGCTCGCGCATAC
GGTCGTCGCGTTCGTCGTGACGACCGCGTTCGTCGTGCTCGGCACGGGCGCGCATTATCTGTTGAGCGCGCGCGCGCAGG
CGGAGAGCCGCGTGATGGTGAAGATGGCGCTCGGGTTTCTCGCGATCGCGGTGCCCGTGCAGATCGCGCTCGGCGACGCG
CACGGGCTCAATACGCTCGCGCATCAGCCGGTCAAGCTCGCGGCGATGGAAGGGCTCTGGGATACCGGGCGCGGCGTGCG
CGCGACGTTGTTCGCGATCCCCGACGGCGCCCGCGAGACGAACCGCTTCGAACTGGCGATTCCGACGCTCGGCAGCCTGT
ATCTGACGCACGATCCGAACGGGCTCGTACGCGGGCTCAAGGATTGGCCGCGCGACGAGCGCCCGCCGGTGGCGGTGGTG
TTCTTCGCGTTTCGCCTGATGGTCGGGCTCGGGCTCGTGATGCTCGCGATCGTGATTCGCGGGCTGACGCTCTGGCGCGG
CGGCCGGCTGTACGTACGGCGCGGCTGGCTCGCGACCTGCCGCGCGGCGACGCCGATCGGCTTCGTCGCGGTGCTGGCCG
GCTGGACGACGACGGAAGCCGGCCGGCAGCCCTGGACGGTGTACGGGCTGATGCGCACCGCCGATTCCGTCACGCCTTCG
CTCACGACGACGGATGTCGCGCTGTCGTTGGCCGCGTACGTGCTCTGCTATCTGGCGATGTTCGGCGCGGGCTTCGTGCT
GCTGCTGAGGCTCGTGCGGCTCGGGCCGCCGGCCGCTTCGGCCGCTTCTTCCGCTTGCGCGGCGGAGCCCGAAGCGGCGG
CCGTGCCGGGCCGGCGCTCCGCGCGGCCGCTGTCCGCGGTGTCCGGCGGCGCGGCGGGGACGACGGAGCGAAGCGATGCT
GCTTGA

Upstream 100 bases:

>100_bases
TTGCCGCCATGCGCGCGCCCGTCGGCGCCGATGGGCATCGCGCTTGCTGCGCCGGCCCCGTGCGCATTGTCGGTACACAT
CGTCATCCAGGAGGCTCCGC

Downstream 100 bases:

>100_bases
TCTCGTGCCGTTGTGGGCGGGCGTGCTCGCGCTGTCGGTGCTGATGTACGTGCTGCTCGACGGCTTCGATCTCGGCGTGG
GGATGCTGTTTTTCTTTCAC

Product: cytochrome D ubiquinol oxidase subunit I

Products: Ubiquinone-8; H2O. [C]

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MMEIDALLLSRLQFAWVIALHILLPALTVGLACYVATLEALAWATGRDVYRRLSAFWLRIFAVSFGMGVVSGIVMPFQFG
TNWSRFVAATSNVIGGFMAYEVLTAFFLESAFLGVLLFGRRRVPQWAHALAAALVALGTLLSSFWILAVNSWMQTPSGYR
FVDGRFYPESIVAVLLSPSFPYRLAHTVVAFVVTTAFVVLGTGAHYLLSARAQAESRVMVKMALGFLAIAVPVQIALGDA
HGLNTLAHQPVKLAAMEGLWDTGRGVRATLFAIPDGARETNRFELAIPTLGSLYLTHDPNGLVRGLKDWPRDERPPVAVV
FFAFRLMVGLGLVMLAIVIRGLTLWRGGRLYVRRGWLATCRAATPIGFVAVLAGWTTTEAGRQPWTVYGLMRTADSVTPS
LTTTDVALSLAAYVLCYLAMFGAGFVLLLRLVRLGPPAASAASSACAAEPEAAAVPGRRSARPLSAVSGGAAGTTERSDA
A

Sequences:

>Translated_481_residues
MMEIDALLLSRLQFAWVIALHILLPALTVGLACYVATLEALAWATGRDVYRRLSAFWLRIFAVSFGMGVVSGIVMPFQFG
TNWSRFVAATSNVIGGFMAYEVLTAFFLESAFLGVLLFGRRRVPQWAHALAAALVALGTLLSSFWILAVNSWMQTPSGYR
FVDGRFYPESIVAVLLSPSFPYRLAHTVVAFVVTTAFVVLGTGAHYLLSARAQAESRVMVKMALGFLAIAVPVQIALGDA
HGLNTLAHQPVKLAAMEGLWDTGRGVRATLFAIPDGARETNRFELAIPTLGSLYLTHDPNGLVRGLKDWPRDERPPVAVV
FFAFRLMVGLGLVMLAIVIRGLTLWRGGRLYVRRGWLATCRAATPIGFVAVLAGWTTTEAGRQPWTVYGLMRTADSVTPS
LTTTDVALSLAAYVLCYLAMFGAGFVLLLRLVRLGPPAASAASSACAAEPEAAAVPGRRSARPLSAVSGGAAGTTERSDA
A
>Mature_481_residues
MMEIDALLLSRLQFAWVIALHILLPALTVGLACYVATLEALAWATGRDVYRRLSAFWLRIFAVSFGMGVVSGIVMPFQFG
TNWSRFVAATSNVIGGFMAYEVLTAFFLESAFLGVLLFGRRRVPQWAHALAAALVALGTLLSSFWILAVNSWMQTPSGYR
FVDGRFYPESIVAVLLSPSFPYRLAHTVVAFVVTTAFVVLGTGAHYLLSARAQAESRVMVKMALGFLAIAVPVQIALGDA
HGLNTLAHQPVKLAAMEGLWDTGRGVRATLFAIPDGARETNRFELAIPTLGSLYLTHDPNGLVRGLKDWPRDERPPVAVV
FFAFRLMVGLGLVMLAIVIRGLTLWRGGRLYVRRGWLATCRAATPIGFVAVLAGWTTTEAGRQPWTVYGLMRTADSVTPS
LTTTDVALSLAAYVLCYLAMFGAGFVLLLRLVRLGPPAASAASSACAAEPEAAAVPGRRSARPLSAVSGGAAGTTERSDA
A

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=308, Percent_Identity=38.6363636363636, Blast_Score=200, Evalue=1e-52,
Organism=Escherichia coli, GI1787212, Length=318, Percent_Identity=37.4213836477987, Blast_Score=196, Evalue=4e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.- [C]

Molecular weight: Translated: 51642; Mature: 51642

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEIDALLLSRLQFAWVIALHILLPALTVGLACYVATLEALAWATGRDVYRRLSAFWLRI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FAVSFGMGVVSGIVMPFQFGTNWSRFVAATSNVIGGFMAYEVLTAFFLESAFLGVLLFGR
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RRVPQWAHALAAALVALGTLLSSFWILAVNSWMQTPSGYRFVDGRFYPESIVAVLLSPSF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHCCCC
PYRLAHTVVAFVVTTAFVVLGTGAHYLLSARAQAESRVMVKMALGFLAIAVPVQIALGDA
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
HGLNTLAHQPVKLAAMEGLWDTGRGVRATLFAIPDGARETNRFELAIPTLGSLYLTHDPN
CCCHHHHCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEECCC
GLVRGLKDWPRDERPPVAVVFFAFRLMVGLGLVMLAIVIRGLTLWRGGRLYVRRGWLATC
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
RAATPIGFVAVLAGWTTTEAGRQPWTVYGLMRTADSVTPSLTTTDVALSLAAYVLCYLAM
HCCCCHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
FGAGFVLLLRLVRLGPPAASAASSACAAEPEAAAVPGRRSARPLSAVSGGAAGTTERSDA
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
A
C
>Mature Secondary Structure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C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O. [C]

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]