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The map label for this gene is yijC [C]

Identifier: 126208944

GI number: 126208944

Start: 1695266

End: 1695898

Strand: Reverse

Name: yijC [C]

Synonym: APL_1480

Alternate gene names: 126208944

Gene position: 1695898-1695266 (Counterclockwise)

Preceding gene: 126208945

Following gene: 126208943

Centisome position: 74.56

GC content: 46.45

Gene sequence:

>633_bases
ATGAGTAATATCGGTATCCGCGCCCAACAAAAAGAGAAAACGCGTCGTGCATTGGTGGATGCGGCTTTTAACCAATTAAG
TGCGGAAAAAAGTTTTTCTAACTTGAGTTTACGCGAAGTGTCCAGAGAAGCCGGTATTGCGCCGACTTCATTCTATCGCC
ATTTTAAAGATATGGACGAATTAGGATTGGCGATGGTGGACGAATCGGGATTACTCTTACGTCAATTAATGCGCCAAGCG
CGCAAGCGTATTGCGACCGGCGGAAGCGTAGTCGCCGTTTCGACCGATACTTTCTTCGAGTTAATTGCCGATCGCCCGAA
TGTGTTCCGCTTACTGCTACGAGAAAGTTCCGGTACTTCGCAAGCGTTTCGTACCGCGGCATCGCGCGAGATTCAACATT
TTATTGCCGAGCTGACCGATTATATTATGGCGAAAGATCCGAACAGCAGCCGTGAAATCGCCTATATCCAAGCCGAAGGC
TTAGTGACTATCGTATTTACCGCCGGCTCTTATGCGCTTGATATGAATACGCAAGAGCGAGAAAAATTAAAAAAACGCGT
GATTATGCAATTAAGAATGTTAGCCAGAGGAGCGGCTTCTTATACTTATAGCCACGACAAGGAACACCAATAA

Upstream 100 bases:

>100_bases
CGCACCGTCGGCTTAATTTATCGTCCGGGTTCACCGCTACGTATTCGTTACGAACGTCTTGCAAAAGAAGTTTCCAAGAT
TATGAAACAAGAGAAAATTC

Downstream 100 bases:

>100_bases
TGCAGAACAAATACGCTATGCTTTCACGTTTCGGTAAAAACATTTTTTTCTACGGATTAATGTTTATCGTGCTAAGTACC
GTGATTGATTGGTATCGTAA

Product: DNA-binding transcriptional repressor FabR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSNIGIRAQQKEKTRRALVDAAFNQLSAEKSFSNLSLREVSREAGIAPTSFYRHFKDMDELGLAMVDESGLLLRQLMRQA
RKRIATGGSVVAVSTDTFFELIADRPNVFRLLLRESSGTSQAFRTAASREIQHFIAELTDYIMAKDPNSSREIAYIQAEG
LVTIVFTAGSYALDMNTQEREKLKKRVIMQLRMLARGAASYTYSHDKEHQ

Sequences:

>Translated_210_residues
MSNIGIRAQQKEKTRRALVDAAFNQLSAEKSFSNLSLREVSREAGIAPTSFYRHFKDMDELGLAMVDESGLLLRQLMRQA
RKRIATGGSVVAVSTDTFFELIADRPNVFRLLLRESSGTSQAFRTAASREIQHFIAELTDYIMAKDPNSSREIAYIQAEG
LVTIVFTAGSYALDMNTQEREKLKKRVIMQLRMLARGAASYTYSHDKEHQ
>Mature_209_residues
SNIGIRAQQKEKTRRALVDAAFNQLSAEKSFSNLSLREVSREAGIAPTSFYRHFKDMDELGLAMVDESGLLLRQLMRQAR
KRIATGGSVVAVSTDTFFELIADRPNVFRLLLRESSGTSQAFRTAASREIQHFIAELTDYIMAKDPNSSREIAYIQAEGL
VTIVFTAGSYALDMNTQEREKLKKRVIMQLRMLARGAASYTYSHDKEHQ

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693209, Length=205, Percent_Identity=64.390243902439, Blast_Score=271, Evalue=2e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23702; Mature: 23571

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIGIRAQQKEKTRRALVDAAFNQLSAEKSFSNLSLREVSREAGIAPTSFYRHFKDMDE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHH
LGLAMVDESGLLLRQLMRQARKRIATGGSVVAVSTDTFFELIADRPNVFRLLLRESSGTS
HCHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCHHHHHHHHCCCCHH
QAFRTAASREIQHFIAELTDYIMAKDPNSSREIAYIQAEGLVTIVFTAGSYALDMNTQER
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCEEEECCHHHH
EKLKKRVIMQLRMLARGAASYTYSHDKEHQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SNIGIRAQQKEKTRRALVDAAFNQLSAEKSFSNLSLREVSREAGIAPTSFYRHFKDMDE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHH
LGLAMVDESGLLLRQLMRQARKRIATGGSVVAVSTDTFFELIADRPNVFRLLLRESSGTS
HCHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCHHHHHHHHCCCCHH
QAFRTAASREIQHFIAELTDYIMAKDPNSSREIAYIQAEGLVTIVFTAGSYALDMNTQER
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCEEEECCHHHH
EKLKKRVIMQLRMLARGAASYTYSHDKEHQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]