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The map label for this gene is rna [C]

Identifier: 126208735

GI number: 126208735

Start: 1458764

End: 1459531

Strand: Direct

Name: rna [C]

Synonym: APL_1269

Alternate gene names: 126208735

Gene position: 1458764-1459531 (Clockwise)

Preceding gene: 126208734

Following gene: 126208736

Centisome position: 64.14

GC content: 46.48

Gene sequence:

>768_bases
ATGAACCAAAAGCAGCTTATCAAATTGGCCGCCTTACTGATTCTTGCGGCGATCTCTTATTTTTTCGGCAGTCAAACGAA
CACGTCGAAACCGGTTAAACAAGCACAAAAACAGCAACAAAACGACTATGCAGCGGAAAACGATACGCCGATTGCCAAAG
CACCGCAGCCGCAATCCGCTTCGGCGACTCAAGCGGCGCTTTCGATGAATTACGATTCCAAAATGTATGAAGATAAAATC
GGGCAAAATAAACACGCACCGGTTGATTACTATATGCTAGCGCTTTCTTGGTCGCCGGCTTTTTGCGATTCGCAACGCCA
TAAAAACCAAGGCGATGTACCGCAACGTTTAGCTTATCAGTGTGCCGGCAGTCAAAACTTCGGCTGGGTTATCCACGGTT
TATGGCCGCAAAACGCCAAAGCTCGTTCGGTGGATGATCACCCTCGCTATTGCCAAGGCGATCTACCGGAAGTTTCGGCG
AAAATTATTGAGCAATATCTACCGGAATCACCGGGGGCCGCATTATTACAAGGCGAATGGGAGAAACACGGCAGCTGCGC
TTTCGATAGCGCGGAAAGCTATTTTGCCAAACAAAAAGAGTTGTTTTACAGCCTAAAACTACCGGCAAAAAATCTCCGTA
AAAACGATTTATTCCAATGGATGCGTAAACATAACCCTCAGCTGCGCGGCGTTTATTTAGATGCAAGCAAAACCGAACTC
TATGTTTGCTACGATAAAAAATGGCAACCGATGGACTGTCCGAAATAA

Upstream 100 bases:

>100_bases
GCAAATCCGACCGCTTATTTTTTCTTCCCTCACCTCTCTTTTTTGTTTATAGTAACGCCCTTTCCAACTACTCGAATCCG
TCTTTTCAAACTCATTAAAT

Downstream 100 bases:

>100_bases
ATGACGGAATTAACAGAAAACAGCGCGCTAATGCGTCGGCTGAAAATGCAGGTTCAACGTCAGCTTAAACGTAATTTGGA
GCAAGCCGACCGTTATTTCA

Product: putative ribonuclease

Products: 3'- Phosphomononucleotides; 3'-Phosphooligonucleotides [C]

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MNQKQLIKLAALLILAAISYFFGSQTNTSKPVKQAQKQQQNDYAAENDTPIAKAPQPQSASATQAALSMNYDSKMYEDKI
GQNKHAPVDYYMLALSWSPAFCDSQRHKNQGDVPQRLAYQCAGSQNFGWVIHGLWPQNAKARSVDDHPRYCQGDLPEVSA
KIIEQYLPESPGAALLQGEWEKHGSCAFDSAESYFAKQKELFYSLKLPAKNLRKNDLFQWMRKHNPQLRGVYLDASKTEL
YVCYDKKWQPMDCPK

Sequences:

>Translated_255_residues
MNQKQLIKLAALLILAAISYFFGSQTNTSKPVKQAQKQQQNDYAAENDTPIAKAPQPQSASATQAALSMNYDSKMYEDKI
GQNKHAPVDYYMLALSWSPAFCDSQRHKNQGDVPQRLAYQCAGSQNFGWVIHGLWPQNAKARSVDDHPRYCQGDLPEVSA
KIIEQYLPESPGAALLQGEWEKHGSCAFDSAESYFAKQKELFYSLKLPAKNLRKNDLFQWMRKHNPQLRGVYLDASKTEL
YVCYDKKWQPMDCPK
>Mature_255_residues
MNQKQLIKLAALLILAAISYFFGSQTNTSKPVKQAQKQQQNDYAAENDTPIAKAPQPQSASATQAALSMNYDSKMYEDKI
GQNKHAPVDYYMLALSWSPAFCDSQRHKNQGDVPQRLAYQCAGSQNFGWVIHGLWPQNAKARSVDDHPRYCQGDLPEVSA
KIIEQYLPESPGAALLQGEWEKHGSCAFDSAESYFAKQKELFYSLKLPAKNLRKNDLFQWMRKHNPQLRGVYLDASKTEL
YVCYDKKWQPMDCPK

Specific function: One Of The Few RNAses That Cleaves The Phosphodiester Bond Between Any Two Nucleotide. Shows A Preference For Cytidylic Or Guanylic Acid. [C]

COG id: COG3719

COG function: function code J; Ribonuclease I

Gene ontology:

Cell location: Periplasmic Protein And Cytoplasm. [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase T2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001568
- InterPro:   IPR018188 [H]

Pfam domain/function: PF00445 Ribonuclease_T2 [H]

EC number: 3.1.27.6 [C]

Molecular weight: Translated: 28977; Mature: 28977

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS00530 RNASE_T2_1 ; PS00531 RNASE_T2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQKQLIKLAALLILAAISYFFGSQTNTSKPVKQAQKQQQNDYAAENDTPIAKAPQPQSA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
SATQAALSMNYDSKMYEDKIGQNKHAPVDYYMLALSWSPAFCDSQRHKNQGDVPQRLAYQ
HHHHHHHHCCCCHHHHHHHCCCCCCCCCEEEEEEEECCCHHHCCHHCCCCCCHHHHHHHH
CAGSQNFGWVIHGLWPQNAKARSVDDHPRYCQGDLPEVSAKIIEQYLPESPGAALLQGEW
HCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCC
EKHGSCAFDSAESYFAKQKELFYSLKLPAKNLRKNDLFQWMRKHNPQLRGVYLDASKTEL
CCCCCCCCCCHHHHHHHHHHHHEEECCCHHHCCHHHHHHHHHHCCCCEEEEEEECCCCEE
YVCYDKKWQPMDCPK
EEEECCCCCCCCCCC
>Mature Secondary Structure
MNQKQLIKLAALLILAAISYFFGSQTNTSKPVKQAQKQQQNDYAAENDTPIAKAPQPQSA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
SATQAALSMNYDSKMYEDKIGQNKHAPVDYYMLALSWSPAFCDSQRHKNQGDVPQRLAYQ
HHHHHHHHCCCCHHHHHHHCCCCCCCCCEEEEEEEECCCHHHCCHHCCCCCCHHHHHHHH
CAGSQNFGWVIHGLWPQNAKARSVDDHPRYCQGDLPEVSAKIIEQYLPESPGAALLQGEW
HCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCC
EKHGSCAFDSAESYFAKQKELFYSLKLPAKNLRKNDLFQWMRKHNPQLRGVYLDASKTEL
CCCCCCCCCCHHHHHHHHHHHHEEECCCHHHCCHHHHHHHHHHCCCCEEEEEEECCCCEE
YVCYDKKWQPMDCPK
EEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Nucleotides [C]

Specific reaction: Endonucleolytic Cleavage With 2',3'-Cyclic Phosphate Intermediates. [C]

General reaction: Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]