Click here to switch to the map view.

The map label for this gene is 126208596

Identifier: 126208596

GI number: 126208596

Start: 1302072

End: 1302770

Strand: Reverse

Name: 126208596

Synonym: APL_1126

Alternate gene names: NA

Gene position: 1302770-1302072 (Counterclockwise)

Preceding gene: 126208597

Following gene: 126208595

Centisome position: 57.28

GC content: 41.06

Gene sequence:

>699_bases
ATGAAAGTTATTTATTCTTTAATTTTATTCGTCTTTTTTAATTTAATCTCTCCCTCGCTCTATGCCGCTTCAGACAATGA
AATCAGTTGTAAAGTGGTAGGAATCAGCGACGGCGACACGCTGACCTGTTTACACAAACTCAAACCGCTTAAAGTACGTT
TGCTACATATTGACGCACCGGAATCCGCTCAGTCCTACGGTAATAAAGCGAAACAAACATTGGCAAATCTCGTGTTTAAA
AAACAAGTGATATTACGGTATAACGGCTATGATCGTTATCAACGTTTATTAGCGGTGGTATATGACGAGCAAGAACGCAA
TATCAATTTATTATTAGTAAAAAGAGGCATGGCGTGGGCATACCGTGAAACCTTGCCGATTTATGAAAATGCCATGCAAA
AAGCGAAGCGAGAAAAGCAAGGATTATGGCAAGATAAATCGCCGATAAATCCCGCACAATGGCGGCAAATTCATCAGGCG
GACAAGCGGTCGGATTTCGATTGGCATTTGCAAAATAGGGCTAAAACACGACCGCTTGCTAAAGAGAAAGCGGTAGATTG
TCATAAAGTGTTACATTGTCGTGATTTTAGCGATTACCAAAGTGCGAAGCGTTATTTCGATCTATGCGGTTCTAAAACGA
TGGACGGTAATCGTGACGGTATTCCTTGTAATAAATTGTATCGGGAGGCGGTGCGTTAA

Upstream 100 bases:

>100_bases
ATTTTACGCGCTTAAAAAACGGCGAACTGGAATAAGATTCGCACCGACTGATTGAAAATCTGTTAAAGTGTAGGGTAATA
CCTACACTTTTTTATTTTGT

Downstream 100 bases:

>100_bases
TGAATATGCAGCAAACGGAAGCGTTTAGATCTCAATTTCCTTTTTTTCGACAACAAGCGGAATGGAGTTATCTGGACTCC
GCCGCCACGACTTTAAAACC

Product: putative micrococcal nuclease (thermonuclease)-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKVIYSLILFVFFNLISPSLYAASDNEISCKVVGISDGDTLTCLHKLKPLKVRLLHIDAPESAQSYGNKAKQTLANLVFK
KQVILRYNGYDRYQRLLAVVYDEQERNINLLLVKRGMAWAYRETLPIYENAMQKAKREKQGLWQDKSPINPAQWRQIHQA
DKRSDFDWHLQNRAKTRPLAKEKAVDCHKVLHCRDFSDYQSAKRYFDLCGSKTMDGNRDGIPCNKLYREAVR

Sequences:

>Translated_232_residues
MKVIYSLILFVFFNLISPSLYAASDNEISCKVVGISDGDTLTCLHKLKPLKVRLLHIDAPESAQSYGNKAKQTLANLVFK
KQVILRYNGYDRYQRLLAVVYDEQERNINLLLVKRGMAWAYRETLPIYENAMQKAKREKQGLWQDKSPINPAQWRQIHQA
DKRSDFDWHLQNRAKTRPLAKEKAVDCHKVLHCRDFSDYQSAKRYFDLCGSKTMDGNRDGIPCNKLYREAVR
>Mature_232_residues
MKVIYSLILFVFFNLISPSLYAASDNEISCKVVGISDGDTLTCLHKLKPLKVRLLHIDAPESAQSYGNKAKQTLANLVFK
KQVILRYNGYDRYQRLLAVVYDEQERNINLLLVKRGMAWAYRETLPIYENAMQKAKREKQGLWQDKSPINPAQWRQIHQA
DKRSDFDWHLQNRAKTRPLAKEKAVDCHKVLHCRDFSDYQSAKRYFDLCGSKTMDGNRDGIPCNKLYREAVR

Specific function: Unknown

COG id: COG1525

COG function: function code L; Micrococcal nuclease (thermonuclease) homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thermonuclease family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016071
- InterPro:   IPR006021
- InterPro:   IPR002071 [H]

Pfam domain/function: PF00565 SNase [H]

EC number: NA

Molecular weight: Translated: 27015; Mature: 27015

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS01123 TNASE_1 ; PS01284 TNASE_2 ; PS50830 TNASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVIYSLILFVFFNLISPSLYAASDNEISCKVVGISDGDTLTCLHKLKPLKVRLLHIDAP
CHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEEECCCCHHHHHHHCCCEEEEEEEECCC
ESAQSYGNKAKQTLANLVFKKQVILRYNGYDRYQRLLAVVYDEQERNINLLLVKRGMAWA
HHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHCCCCCCEEEEEEECCCHHH
YRETLPIYENAMQKAKREKQGLWQDKSPINPAQWRQIHQADKRSDFDWHLQNRAKTRPLA
HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCH
KEKAVDCHKVLHCRDFSDYQSAKRYFDLCGSKTMDGNRDGIPCNKLYREAVR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MKVIYSLILFVFFNLISPSLYAASDNEISCKVVGISDGDTLTCLHKLKPLKVRLLHIDAP
CHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEEECCCCHHHHHHHCCCEEEEEEEECCC
ESAQSYGNKAKQTLANLVFKKQVILRYNGYDRYQRLLAVVYDEQERNINLLLVKRGMAWA
HHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHCCCCCCEEEEEEECCCHHH
YRETLPIYENAMQKAKREKQGLWQDKSPINPAQWRQIHQADKRSDFDWHLQNRAKTRPLA
HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCH
KEKAVDCHKVLHCRDFSDYQSAKRYFDLCGSKTMDGNRDGIPCNKLYREAVR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]