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The map label for this gene is yaaJ [C]

Identifier: 126208597

GI number: 126208597

Start: 1302836

End: 1304203

Strand: Reverse

Name: yaaJ [C]

Synonym: APL_1127

Alternate gene names: 126208597

Gene position: 1304203-1302836 (Counterclockwise)

Preceding gene: 126208598

Following gene: 126208596

Centisome position: 57.34

GC content: 44.44

Gene sequence:

>1368_bases
ATGTCATTTGACGCAATTCTTAATCAAATTAATAGCCTTATTTGGGGCGCTCCGCTTTTAATTTTACTTTCCGGTGTCGG
TATTTATCTGACTTGCGCTTTGAAAGGTATTCAAATCTCGCAGCTTCCGCGTGCATTCGTCTATATGTTCAAACCGGAAA
AAGGGAAAGGACAATCCGGCGATATTCCCGCTTTCGCCGCACTTTCGACCGCACTTGCCGCAACCATCGGTACCGGTAAT
ATTGTCGGCGTAGCGACCGCTATTCATTCGGGCGGACCGGGCGCATTATTCTGGATGTGGTTGATCGCTTTATTCGGTAT
GGCGACCAAATATGCGGAAGGTTTATTGGCGATTAAATTCCGTGGTCGTGATAAAGACGGTTTTGTCGCCGGCGGCCCGA
TGTATTATATCGAAATGGGAATGGGTAAAAACTGGAAATGGCTGGCAAAAGCATTTGCATTTTTTGGTGTATTGGTTGCC
TTATTAGGGATTGGTACCTTTCCGCAAGTAAACGGTATTACTCATTCGTTAGAATCGACTTTCGATATACCGGTCGTATT
TAGCTCGATTGTTTTAACCTTAGTCGTGACTTCGATCATTTTAGGCGGTGTGAAACGTATTTCTAAAATCGCATCGATTA
TCGTACCTTTTATGGCGGTCGCTTATGTGATTGCATCTGTCAGCGTATTAATTATGAATGCGGAAAAAGTACCGGATGCG
ATCGTATTAATCGTGCATGCGGCGTTTAATCCGGAAGCCGCATTAGGCGGAGCTTTCGGTTTTACCGTAATGCAAGCGAT
TCAATTAGGGGTGGCACGCGGTATTTTCTCGAATGAATCGGGTTTAGGTTCCGCTCCGATTGCAGCAGCGGCGGCACAAA
CTAAAGAACCGGTACGCCAAGGTTTAATTTCCATGACCGGTACTTTCTTGGATACGATTATTGTGTGTACTATGACCGGT
TTAGTTATCGTATTAACCGGCGCTTGGACCGGTAAAGCCGAAGGGGCTGAATTAACCAATCTTGCCTTTAACCAAGGTTT
AGACAGCTCGTTCGGGGCGGTCATCGTTACCGTCGGATTGATTTTCTTCGCATTTACCACTATTTTGGGCTGGTGCTATT
ACGGTGAGCGTTGTTTCGTGTACCTCACGAACGGCAGAACCAAAGGAATTAAATTCTATCGTTTACTGTTTATCTTATTA
ATTGCTTCCGCACCGTTCTTACAATTAAATACGATTTGGACGATTGCGGATATCGTAAACGGTTTGATGGCGTTCCCGAA
TCTCATCGCATTAATTGCGTTACGTAAAGTCATTATCGAAGAAACGAAAAGCTATTTTACGCGCTTAAAAAACGGCGAAC
TGGAATAA

Upstream 100 bases:

>100_bases
ATTTTCTATTTGTGTTTAGGATTTTGCAAATTTTTGGCGAAATTCGACCGCTTATAGCCTGCTTTTCTTTCCTTGTAAGT
TATGTTTACGAGGAACCATC

Downstream 100 bases:

>100_bases
GATTCGCACCGACTGATTGAAAATCTGTTAAAGTGTAGGGTAATACCTACACTTTTTTATTTTGTATGAAAGTTATTTAT
TCTTTAATTTTATTCGTCTT

Product: Na+/alanine symporter

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MSFDAILNQINSLIWGAPLLILLSGVGIYLTCALKGIQISQLPRAFVYMFKPEKGKGQSGDIPAFAALSTALAATIGTGN
IVGVATAIHSGGPGALFWMWLIALFGMATKYAEGLLAIKFRGRDKDGFVAGGPMYYIEMGMGKNWKWLAKAFAFFGVLVA
LLGIGTFPQVNGITHSLESTFDIPVVFSSIVLTLVVTSIILGGVKRISKIASIIVPFMAVAYVIASVSVLIMNAEKVPDA
IVLIVHAAFNPEAALGGAFGFTVMQAIQLGVARGIFSNESGLGSAPIAAAAAQTKEPVRQGLISMTGTFLDTIIVCTMTG
LVIVLTGAWTGKAEGAELTNLAFNQGLDSSFGAVIVTVGLIFFAFTTILGWCYYGERCFVYLTNGRTKGIKFYRLLFILL
IASAPFLQLNTIWTIADIVNGLMAFPNLIALIALRKVIIEETKSYFTRLKNGELE

Sequences:

>Translated_455_residues
MSFDAILNQINSLIWGAPLLILLSGVGIYLTCALKGIQISQLPRAFVYMFKPEKGKGQSGDIPAFAALSTALAATIGTGN
IVGVATAIHSGGPGALFWMWLIALFGMATKYAEGLLAIKFRGRDKDGFVAGGPMYYIEMGMGKNWKWLAKAFAFFGVLVA
LLGIGTFPQVNGITHSLESTFDIPVVFSSIVLTLVVTSIILGGVKRISKIASIIVPFMAVAYVIASVSVLIMNAEKVPDA
IVLIVHAAFNPEAALGGAFGFTVMQAIQLGVARGIFSNESGLGSAPIAAAAAQTKEPVRQGLISMTGTFLDTIIVCTMTG
LVIVLTGAWTGKAEGAELTNLAFNQGLDSSFGAVIVTVGLIFFAFTTILGWCYYGERCFVYLTNGRTKGIKFYRLLFILL
IASAPFLQLNTIWTIADIVNGLMAFPNLIALIALRKVIIEETKSYFTRLKNGELE
>Mature_454_residues
SFDAILNQINSLIWGAPLLILLSGVGIYLTCALKGIQISQLPRAFVYMFKPEKGKGQSGDIPAFAALSTALAATIGTGNI
VGVATAIHSGGPGALFWMWLIALFGMATKYAEGLLAIKFRGRDKDGFVAGGPMYYIEMGMGKNWKWLAKAFAFFGVLVAL
LGIGTFPQVNGITHSLESTFDIPVVFSSIVLTLVVTSIILGGVKRISKIASIIVPFMAVAYVIASVSVLIMNAEKVPDAI
VLIVHAAFNPEAALGGAFGFTVMQAIQLGVARGIFSNESGLGSAPIAAAAAQTKEPVRQGLISMTGTFLDTIIVCTMTGL
VIVLTGAWTGKAEGAELTNLAFNQGLDSSFGAVIVTVGLIFFAFTTILGWCYYGERCFVYLTNGRTKGIKFYRLLFILLI
ASAPFLQLNTIWTIADIVNGLMAFPNLIALIALRKVIIEETKSYFTRLKNGELE

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=450, Percent_Identity=35.5555555555556, Blast_Score=237, Evalue=1e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 48486; Mature: 48355

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFDAILNQINSLIWGAPLLILLSGVGIYLTCALKGIQISQLPRAFVYMFKPEKGKGQSG
CCHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHCCCCHHHCCCEEEEEECCCCCCCCCC
DIPAFAALSTALAATIGTGNIVGVATAIHSGGPGALFWMWLIALFGMATKYAEGLLAIKF
CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEE
RGRDKDGFVAGGPMYYIEMGMGKNWKWLAKAFAFFGVLVALLGIGTFPQVNGITHSLEST
ECCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC
FDIPVVFSSIVLTLVVTSIILGGVKRISKIASIIVPFMAVAYVIASVSVLIMNAEKVPDA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHCCCE
IVLIVHAAFNPEAALGGAFGFTVMQAIQLGVARGIFSNESGLGSAPIAAAAAQTKEPVRQ
EEEEEEECCCCCHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
GLISMTGTFLDTIIVCTMTGLVIVLTGAWTGKAEGAELTNLAFNQGLDSSFGAVIVTVGL
HHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
IFFAFTTILGWCYYGERCFVYLTNGRTKGIKFYRLLFILLIASAPFLQLNTIWTIADIVN
HHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHH
GLMAFPNLIALIALRKVIIEETKSYFTRLKNGELE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SFDAILNQINSLIWGAPLLILLSGVGIYLTCALKGIQISQLPRAFVYMFKPEKGKGQSG
CHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHCCCCHHHCCCEEEEEECCCCCCCCCC
DIPAFAALSTALAATIGTGNIVGVATAIHSGGPGALFWMWLIALFGMATKYAEGLLAIKF
CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEE
RGRDKDGFVAGGPMYYIEMGMGKNWKWLAKAFAFFGVLVALLGIGTFPQVNGITHSLEST
ECCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC
FDIPVVFSSIVLTLVVTSIILGGVKRISKIASIIVPFMAVAYVIASVSVLIMNAEKVPDA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHCCCE
IVLIVHAAFNPEAALGGAFGFTVMQAIQLGVARGIFSNESGLGSAPIAAAAAQTKEPVRQ
EEEEEEECCCCCHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
GLISMTGTFLDTIIVCTMTGLVIVLTGAWTGKAEGAELTNLAFNQGLDSSFGAVIVTVGL
HHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
IFFAFTTILGWCYYGERCFVYLTNGRTKGIKFYRLLFILLIASAPFLQLNTIWTIADIVN
HHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHH
GLMAFPNLIALIALRKVIIEETKSYFTRLKNGELE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]