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The map label for this gene is cmoB

Identifier: 126208290

GI number: 126208290

Start: 940675

End: 941637

Strand: Direct

Name: cmoB

Synonym: APL_0814

Alternate gene names: 126208290

Gene position: 940675-941637 (Clockwise)

Preceding gene: 126208287

Following gene: 126208291

Centisome position: 41.36

GC content: 41.43

Gene sequence:

>963_bases
ATGATTGACTTTCGTCCTTTTTATCAACAAATCGCAACAACGAATCTGTCCGCTTGGCTGGAAACTTTGCCTTTACAATT
AAAACAATGGGAAAAAACCACACATGGTGATTATGCCAAATGGGCAAAAATTGTCGATTTTATGCCAAATTCGACCGCTT
GTATTAATTTGAAAGATAAGGTGGAATCTATTCCGCACACTCCGCTTTCTGTTGGTGAAACCAAACAACTTACGCATCAT
TTAAAACAGCTGATGCCTTGGCGTAAAGGACCTTATCATTTGCACGGAATTCATATTGATACCGAATGGCGTTCCGATTT
TAAATGGGATCGTGTTCTGCCACATCTTGCTCCGCTGAAAGACCGTACTATTTTAGATGTCGGTTGTGGTAGCGGTTATC
ATATGTGGCGTATGGTCGGCGAAGGCGCAAAAATGGTGGTAGGAATTGACCCAACCGAATTATTCCTTTGCCAATTTGAA
GTAGTACGCAAATTACTCGGCAATGACCGTCGTGCAAATTTAATTCCGCTTGGTATTGAGCAAATGCAACCGTTAGCCGC
TTTTGATACGGTTTTCTCAATGGGCGTGCTTTATCACCGTAAATCGCCATTAGATCATCTTTCACAACTTAAAGCGCAAC
TGGTGAAAGGTGGTGAATTGGTATTAGAAACGCTAGTGATTGATGGCGATGTGAATACTTGTCTTGTTCCAGCCGATCGC
TATGCGAAGATGAAAAACGTTTATTTCATTCCGTCGATCGATTGCCTGATTAACTGGTTGGAAAAAGTTGGTTTCAAAAA
TGTCCGCTGTGTTGATCAAGCAGTTACAACATTAGAAGAACAGCGTAAAACCGATTGGTTGGAAAATGAAAGTTTGGTCG
ATTTCCTCGATCCAAATGATCATAGTAAAACCATTGAAGGCTATCCTGCGCCGAAACGTGCAGTAATTTTAGCCAACGCC
TAA

Upstream 100 bases:

>100_bases
AATCTTATCATTTTAAACAAAGAGTAAGCGGTTAAATTTTTAGATTTTTTTGCAAATTTTGCTAGAATGTCGGCTTTATT
TTAATGACACAAAAATTTCT

Downstream 100 bases:

>100_bases
CACATATACCTATCTGCTAAAGCCTCACATTGCTGAGGCTTATTCTTTTGAACTAAATCAAACTCGTTCCAATTTACCCC
ATTTTTTGTATATCCCCCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MIDFRPFYQQIATTNLSAWLETLPLQLKQWEKTTHGDYAKWAKIVDFMPNSTACINLKDKVESIPHTPLSVGETKQLTHH
LKQLMPWRKGPYHLHGIHIDTEWRSDFKWDRVLPHLAPLKDRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFE
VVRKLLGNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKAQLVKGGELVLETLVIDGDVNTCLVPADR
YAKMKNVYFIPSIDCLINWLEKVGFKNVRCVDQAVTTLEEQRKTDWLENESLVDFLDPNDHSKTIEGYPAPKRAVILANA

Sequences:

>Translated_320_residues
MIDFRPFYQQIATTNLSAWLETLPLQLKQWEKTTHGDYAKWAKIVDFMPNSTACINLKDKVESIPHTPLSVGETKQLTHH
LKQLMPWRKGPYHLHGIHIDTEWRSDFKWDRVLPHLAPLKDRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFE
VVRKLLGNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKAQLVKGGELVLETLVIDGDVNTCLVPADR
YAKMKNVYFIPSIDCLINWLEKVGFKNVRCVDQAVTTLEEQRKTDWLENESLVDFLDPNDHSKTIEGYPAPKRAVILANA
>Mature_320_residues
MIDFRPFYQQIATTNLSAWLETLPLQLKQWEKTTHGDYAKWAKIVDFMPNSTACINLKDKVESIPHTPLSVGETKQLTHH
LKQLMPWRKGPYHLHGIHIDTEWRSDFKWDRVLPHLAPLKDRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFE
VVRKLLGNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKAQLVKGGELVLETLVIDGDVNTCLVPADR
YAKMKNVYFIPSIDCLINWLEKVGFKNVRCVDQAVTTLEEQRKTDWLENESLVDFLDPNDHSKTIEGYPAPKRAVILANA

Specific function: Catalyzes the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at position 34 in tRNA

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoB family

Homologues:

Organism=Escherichia coli, GI1788178, Length=320, Percent_Identity=64.0625, Blast_Score=428, Evalue=1e-121,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CMOB_ACTP2 (A3N0H4)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001053515.1
- ProteinModelPortal:   A3N0H4
- SMR:   A3N0H4
- STRING:   A3N0H4
- GeneID:   4850246
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_0814
- eggNOG:   COG0500
- HOGENOM:   HBG296882
- OMA:   DVIFCLG
- PhylomeDB:   A3N0H4
- ProtClustDB:   PRK15068
- BioCyc:   APLE416269:APL_0814-MONOMER
- HAMAP:   MF_01590
- InterPro:   IPR010017
- TIGRFAMs:   TIGR00452

Pfam domain/function: PF08003 Methyltransf_9

EC number: NA

Molecular weight: Translated: 36584; Mature: 36584

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFRPFYQQIATTNLSAWLETLPLQLKQWEKTTHGDYAKWAKIVDFMPNSTACINLKDK
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEHHH
VESIPHTPLSVGETKQLTHHLKQLMPWRKGPYHLHGIHIDTEWRSDFKWDRVLPHLAPLK
HHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHCCCC
DRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFEVVRKLLGNDRRANLIPLGIE
CCEEEEECCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECHH
QMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKAQLVKGGELVLETLVIDGDVNTCLVPADR
HHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEECCHH
YAKMKNVYFIPSIDCLINWLEKVGFKNVRCVDQAVTTLEEQRKTDWLENESLVDFLDPND
HHHHCCEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC
HSKTIEGYPAPKRAVILANA
CCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MIDFRPFYQQIATTNLSAWLETLPLQLKQWEKTTHGDYAKWAKIVDFMPNSTACINLKDK
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEHHH
VESIPHTPLSVGETKQLTHHLKQLMPWRKGPYHLHGIHIDTEWRSDFKWDRVLPHLAPLK
HHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHCCCC
DRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFEVVRKLLGNDRRANLIPLGIE
CCEEEEECCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECHH
QMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKAQLVKGGELVLETLVIDGDVNTCLVPADR
HHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEECCHH
YAKMKNVYFIPSIDCLINWLEKVGFKNVRCVDQAVTTLEEQRKTDWLENESLVDFLDPND
HHHHCCEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC
HSKTIEGYPAPKRAVILANA
CCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA