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The map label for this gene is torY [H]

Identifier: 126208169

GI number: 126208169

Start: 789616

End: 790734

Strand: Reverse

Name: torY [H]

Synonym: APL_0689

Alternate gene names: 126208169

Gene position: 790734-789616 (Counterclockwise)

Preceding gene: 126208176

Following gene: 126208168

Centisome position: 34.77

GC content: 45.13

Gene sequence:

>1119_bases
ATGTCTAAATTTAAATTATCACTGGCAGGCGGAGTGATTTGCGCCGTATTGGGTGCTGTAGCGTTATTTGGCGTACAGTC
GGTAATGAAAGCGACCAGCTCTACTGAATTTTGCGTAAGTTGCCATTCGATGAGTCATCCGCAAGCGGAATGGGAAGGTA
CGGTACACTTTTCAAATCGTAAAGGAATTCGAGCGGAATGTTCCGATTGCCACGTTCCGCAAGACGGTTTGCATTATGTA
AAAGCTAAGATAATTGCCTTGAAAGACGTATGGCATACCTTTGTCACCGATAAATTGCCCGATCAAGAAGCCTATGAAAA
ACATCGCTTGGATATGGCGCAACGTGTTTGGGCGGAAATGAAAGAAACCGATTCGGCGACTTGTCGTAGTTGCCATTCAT
TTGAAACAATGGTGCTTACCGAACAAAAAGAATCGGCACAGAAAATGCATAAGTTGGCACAAGAAACCAACCAAACCTGT
ATCGACTGCCATAAAGGTATTGCCCACTTTATGCCGGAAATGCAAGTAGATAACAGTGCGGCATTGGGCGAATTAACCAA
ACACGCCGGACAATTTAGTGCGAGTGACAAAACATTGTATAACTTGGCGATGGCGCCGGCACAAGTGGCACAGGGCGGAG
AAATTCGTTTATTACCGTTTGCGGAAGTATCACAATGGAAAGAATCCGGTGATAAAGTGTCCGGTACGATTAAAGGCTGG
CAACAAGCGGGGGCGGAAAGCATTATTTATATGGGACTAGGCCAGCGGATTATGGTCGGTTTAGTCGCAGATGAAGCAAA
AGATAAACTCACGGTTCATCAAACGGTTCATGACAATGTGACCAATTCGGACTGGAAAGAAGTCAGCGTTGAAGTTTCAT
TACCGAAAACGGCGGTGACTTCCGATATTAATTCGCTTAATCATTTCGGCGATAATTTAAATCAAACCCATTGTAGCGGT
TGTCATGCGCCGATTGGTGCGGATCACTATACGGCGAATCAATGGATCGGTGTAGTGAATTCCATGAAAGACCGTACTTC
AATGACGGCGGACGATGTACGTGCGGTCACTATCTATCTACAACGTAACGCAAAAGATGTTGCGGGTAGTTCACACTAA

Upstream 100 bases:

>100_bases
TACATTCAAAAATGACATAATTTGATCTTAAACAAGGGACACTTTTATATAAGTGCTAATCTTTTACTACTAAAGAGTTA
TTTTTTATGTGGGGAAATGT

Downstream 100 bases:

>100_bases
TTTTATTTAACTTACAGGATACCGAGCTTGTATGCCTAAGTCTTAGATAAGGTGTGCAAGCCTGTGGCAAGCGGTTAAAA
TTCACAAAATTTTTGCAAAA

Product: cytochrome c-type protein TorY

Products: H2O; trimethylamine; NAD [C]

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MSKFKLSLAGGVICAVLGAVALFGVQSVMKATSSTEFCVSCHSMSHPQAEWEGTVHFSNRKGIRAECSDCHVPQDGLHYV
KAKIIALKDVWHTFVTDKLPDQEAYEKHRLDMAQRVWAEMKETDSATCRSCHSFETMVLTEQKESAQKMHKLAQETNQTC
IDCHKGIAHFMPEMQVDNSAALGELTKHAGQFSASDKTLYNLAMAPAQVAQGGEIRLLPFAEVSQWKESGDKVSGTIKGW
QQAGAESIIYMGLGQRIMVGLVADEAKDKLTVHQTVHDNVTNSDWKEVSVEVSLPKTAVTSDINSLNHFGDNLNQTHCSG
CHAPIGADHYTANQWIGVVNSMKDRTSMTADDVRAVTIYLQRNAKDVAGSSH

Sequences:

>Translated_372_residues
MSKFKLSLAGGVICAVLGAVALFGVQSVMKATSSTEFCVSCHSMSHPQAEWEGTVHFSNRKGIRAECSDCHVPQDGLHYV
KAKIIALKDVWHTFVTDKLPDQEAYEKHRLDMAQRVWAEMKETDSATCRSCHSFETMVLTEQKESAQKMHKLAQETNQTC
IDCHKGIAHFMPEMQVDNSAALGELTKHAGQFSASDKTLYNLAMAPAQVAQGGEIRLLPFAEVSQWKESGDKVSGTIKGW
QQAGAESIIYMGLGQRIMVGLVADEAKDKLTVHQTVHDNVTNSDWKEVSVEVSLPKTAVTSDINSLNHFGDNLNQTHCSG
CHAPIGADHYTANQWIGVVNSMKDRTSMTADDVRAVTIYLQRNAKDVAGSSH
>Mature_371_residues
SKFKLSLAGGVICAVLGAVALFGVQSVMKATSSTEFCVSCHSMSHPQAEWEGTVHFSNRKGIRAECSDCHVPQDGLHYVK
AKIIALKDVWHTFVTDKLPDQEAYEKHRLDMAQRVWAEMKETDSATCRSCHSFETMVLTEQKESAQKMHKLAQETNQTCI
DCHKGIAHFMPEMQVDNSAALGELTKHAGQFSASDKTLYNLAMAPAQVAQGGEIRLLPFAEVSQWKESGDKVSGTIKGWQ
QAGAESIIYMGLGQRIMVGLVADEAKDKLTVHQTVHDNVTNSDWKEVSVEVSLPKTAVTSDINSLNHFGDNLNQTHCSGC
HAPIGADHYTANQWIGVVNSMKDRTSMTADDVRAVTIYLQRNAKDVAGSSH

Specific function: Part of the anaerobic respiratory chain of trimethylamine-N-oxide reductase TorZ. Required for electron transfer to the TorZ terminal enzyme [H]

COG id: COG3005

COG function: function code C; Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TorC/TorY family [H]

Homologues:

Organism=Escherichia coli, GI1788181, Length=344, Percent_Identity=43.3139534883721, Blast_Score=306, Evalue=1e-84,
Organism=Escherichia coli, GI1787230, Length=373, Percent_Identity=36.1930294906166, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI1788530, Length=173, Percent_Identity=39.8843930635838, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR009154
- InterPro:   IPR011031
- InterPro:   IPR005126 [H]

Pfam domain/function: PF03264 Cytochrom_NNT [H]

EC number: NA

Molecular weight: Translated: 40808; Mature: 40677

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFKLSLAGGVICAVLGAVALFGVQSVMKATSSTEFCVSCHSMSHPQAEWEGTVHFSNR
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEHHCCCCCCCCCCCEEEECCC
KGIRAECSDCHVPQDGLHYVKAKIIALKDVWHTFVTDKLPDQEAYEKHRLDMAQRVWAEM
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
KETDSATCRSCHSFETMVLTEQKESAQKMHKLAQETNQTCIDCHKGIAHFMPEMQVDNSA
HHCCCHHHHHHHCCHHEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCH
ALGELTKHAGQFSASDKTLYNLAMAPAQVAQGGEIRLLPFAEVSQWKESGDKVSGTIKGW
HHHHHHHHHCCCCCCCHHHHHHHHCHHHHCCCCCEEEEEHHHHHHHHHCCCEEEHHHHHH
QQAGAESIIYMGLGQRIMVGLVADEAKDKLTVHQTVHDNVTNSDWKEVSVEVSLPKTAVT
HHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEHHHHHCCCCCCCCCEEEEEEECCCHHHH
SDINSLNHFGDNLNQTHCSGCHAPIGADHYTANQWIGVVNSMKDRTSMTADDVRAVTIYL
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCEEEEEEE
QRNAKDVAGSSH
ECCCCCCCCCCC
>Mature Secondary Structure 
SKFKLSLAGGVICAVLGAVALFGVQSVMKATSSTEFCVSCHSMSHPQAEWEGTVHFSNR
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEHHCCCCCCCCCCCEEEECCC
KGIRAECSDCHVPQDGLHYVKAKIIALKDVWHTFVTDKLPDQEAYEKHRLDMAQRVWAEM
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
KETDSATCRSCHSFETMVLTEQKESAQKMHKLAQETNQTCIDCHKGIAHFMPEMQVDNSA
HHCCCHHHHHHHCCHHEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCH
ALGELTKHAGQFSASDKTLYNLAMAPAQVAQGGEIRLLPFAEVSQWKESGDKVSGTIKGW
HHHHHHHHHCCCCCCCHHHHHHHHCHHHHCCCCCEEEEEHHHHHHHHHCCCEEEHHHHHH
QQAGAESIIYMGLGQRIMVGLVADEAKDKLTVHQTVHDNVTNSDWKEVSVEVSLPKTAVT
HHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEHHHHHCCCCCCCCCEEEEEEECCCHHHH
SDINSLNHFGDNLNQTHCSGCHAPIGADHYTANQWIGVVNSMKDRTSMTADDVRAVTIYL
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCEEEEEEE
QRNAKDVAGSSH
ECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: trimethylamine-N-oxide; NADH [C]

Specific reaction: trimethylamine-N-oxide + NADH = H2O + trimethylamine + NAD [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]