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The map label for this gene is bfrD [H]

Identifier: 126176544

GI number: 126176544

Start: 5106461

End: 5108581

Strand: Reverse

Name: bfrD [H]

Synonym: Sbal_4363

Alternate gene names: 126176544

Gene position: 5108581-5106461 (Counterclockwise)

Preceding gene: 126176545

Following gene: 126176543

Centisome position: 99.63

GC content: 44.6

Gene sequence:

>2121_bases
ATGGTATTTAAATATTCAGTTTTAGGTTTGGCCGTAGGCTCGGCATTAATGGCTATGCCTGTGTTGGCAGAGGTGGCTAG
CGACGCAAATATCGAGCGCATTAATGTCACTGGCCGCACTTTTAACGATTATAAAGTGGGTACAGCATCAGGCGCCATGC
GCGGTGATATCGACTTAATGGATACCCCACAATCAGTTAATGTGATCCCCGATTTTGTCACGGACGAACAGCTGGCGACT
AACCTCGCTGAAGTGTTAGTTAACGATTCGAGCGTGACGGCAGGAACGACACGCTGGAACCGCCAAGTTTTTAGTATCCG
TGGCTTCGAGTTAGATTCTAGTAATGGTTATCTCATCAATGGCCATCAGCAATGGTCCCATTACGTACAACCCATCGAAA
CCCTGCAGCAAGTTGAAGTGTTAAAAGGCCCTTCGAGCATGTTGTATGGTCAATCTGGCCCTGGTGGTTTAGTGAATATG
GTCACTAAGAAACCAACCTATGATTCAATGCTTAACTTAGGTTTTGATACCGATGGCTACGGTTCTACCCGTGCACAGCT
CGATGCGGGTGGCAGTTTAAACGAAGCACAAAGTATTCGTTACCGCGGTGTGTTAGTGAAGCAAGATACAAAATACTGGC
GTGAGTATTCCGCTAATGATGAGAACCAAGAGCGCGATCGCTGGTTAGGTTATCTCAATATGGAATTTGACCTAAGCGAC
GATTTGTTACTGTCGGTTAAATACGACCATACCCAAGATAAAGCAGGTATCGATGCGGGTGGGTGGTTAGATAAACAAGG
TAATGTCATTGGCGAACGTAAAACCGTTTGGGATGCGCCTTGGGCCTTTACTGACAATACAGTGTCAAACTTAGGTGCCG
ATCTGACTTGGCATATGAGTGACAACTGGAAAGTCAAAGCGGGTTATAACGATCAGCAGTTTAATCGCCAACGTTTTGAT
TCTGCGCCAAGTTTGATTGAAGGCTCCGAAGATCCATTCAAGGATGGTTATAAGATTAAACCCTTCGATCGTTACGATGA
TTGGCAGCATAAAACCGCTTATGCCGATTTCACCGGTGAATTTGCGTTGGCGGGAATGCAGCATCAACTGCTGATTGGGG
CTAACTATCTCGATTATTTCTATCAGCAACAAATTCACCGTGGGGCAGCTCAAACGGTTATTCCTGGGCAGCCTATTACT
CAGCCTGCTCTCGATTACCACACAAAACCCAAAGGTAACGCGAGTACCTATAAGTATTACGGTTTCTACCTGCAGGATTT
AATGACGCTTAATGAACAATGGAAGTTACTTGCAGGTGTACGTTACGACGAACAGAAGAAAGACGCTATAGGTGGGAACA
GCTATGCCGTGTCGCCTAAGTTTGGGGTGATTTATTCGCCAATGGCTAATGGCAGTATTTACATTAATTATTCAAAAAGC
TTTACACCACAGGGTTCAGTGACAAGTTCAGAAGATGTAAATGAAGGAGATAACCTTAAGCCTGAATACGGTACTCAATA
TGAATTAGGGACTAAGTGGGAGTTGTTTGATGACAGCCTACTGTTAACAGCAGCACTTTTTGATATTACGGTTTCTAATG
TCACCATAGAGCAAGATATTCCCGAAACGAGTGATGGCAAGAAAACTATTACTACTCAAGGTGGCGAGCAGCATCACCGC
GGTTTTGAAGTTGGTGCCCAAGGTCAGTTAGGTGAAAGCTGGTTTGTGACTTCTTCTATGATGTATTTAGATGCCGAATA
TAAAACGGGTGCTGGCAAGATCGATGGGAAAATCTTAGATGGTAAAACACCAATCGATGCCCCTGAATGGTCGGCAAATA
TTTGGACTCGTTATGAAGTGACCGATAACTTTGCGATGAACTTCGGTGCTATTTATGTGGGTGAGCGTTTTGCCGATACC
AATAATACCATCAGTAAAGACGGCTATGTGCGCTTCGATATAGGTGCAGCCTACACTATGGATATCATGGGTAAAGATGT
GAGCCTTCGTGCCAATGTCAGAAACCTCTTCGATACTGAATATTTAGACGGTGGCAGCGATAAGATGGTCACTATCGGCC
AAGGCCGTAACTTTAGTGTTGCTGTTGAAGCTAAGTTCTAA

Upstream 100 bases:

>100_bases
ACAGCTAATTGTAAATTCGTGTAAAGAAGATTAAATAAAAACACTTCTCATTTATATTGCCTGCAATTCTAAGACGAAAG
GTCTAATTGAGGTGTTGGCA

Downstream 100 bases:

>100_bases
ATTTATTAGGTTTTAAATTCATTTAAAGCCGCTTGTCCTTAAAGGATAAGCGGCTTTTTTATTGGCTGATGTTTAAGTTC
ACTATTACAGAACGATAAAA

Product: TonB-dependent siderophore receptor

Products: NA

Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]

Number of amino acids: Translated: 706; Mature: 706

Protein sequence:

>706_residues
MVFKYSVLGLAVGSALMAMPVLAEVASDANIERINVTGRTFNDYKVGTASGAMRGDIDLMDTPQSVNVIPDFVTDEQLAT
NLAEVLVNDSSVTAGTTRWNRQVFSIRGFELDSSNGYLINGHQQWSHYVQPIETLQQVEVLKGPSSMLYGQSGPGGLVNM
VTKKPTYDSMLNLGFDTDGYGSTRAQLDAGGSLNEAQSIRYRGVLVKQDTKYWREYSANDENQERDRWLGYLNMEFDLSD
DLLLSVKYDHTQDKAGIDAGGWLDKQGNVIGERKTVWDAPWAFTDNTVSNLGADLTWHMSDNWKVKAGYNDQQFNRQRFD
SAPSLIEGSEDPFKDGYKIKPFDRYDDWQHKTAYADFTGEFALAGMQHQLLIGANYLDYFYQQQIHRGAAQTVIPGQPIT
QPALDYHTKPKGNASTYKYYGFYLQDLMTLNEQWKLLAGVRYDEQKKDAIGGNSYAVSPKFGVIYSPMANGSIYINYSKS
FTPQGSVTSSEDVNEGDNLKPEYGTQYELGTKWELFDDSLLLTAALFDITVSNVTIEQDIPETSDGKKTITTQGGEQHHR
GFEVGAQGQLGESWFVTSSMMYLDAEYKTGAGKIDGKILDGKTPIDAPEWSANIWTRYEVTDNFAMNFGAIYVGERFADT
NNTISKDGYVRFDIGAAYTMDIMGKDVSLRANVRNLFDTEYLDGGSDKMVTIGQGRNFSVAVEAKF

Sequences:

>Translated_706_residues
MVFKYSVLGLAVGSALMAMPVLAEVASDANIERINVTGRTFNDYKVGTASGAMRGDIDLMDTPQSVNVIPDFVTDEQLAT
NLAEVLVNDSSVTAGTTRWNRQVFSIRGFELDSSNGYLINGHQQWSHYVQPIETLQQVEVLKGPSSMLYGQSGPGGLVNM
VTKKPTYDSMLNLGFDTDGYGSTRAQLDAGGSLNEAQSIRYRGVLVKQDTKYWREYSANDENQERDRWLGYLNMEFDLSD
DLLLSVKYDHTQDKAGIDAGGWLDKQGNVIGERKTVWDAPWAFTDNTVSNLGADLTWHMSDNWKVKAGYNDQQFNRQRFD
SAPSLIEGSEDPFKDGYKIKPFDRYDDWQHKTAYADFTGEFALAGMQHQLLIGANYLDYFYQQQIHRGAAQTVIPGQPIT
QPALDYHTKPKGNASTYKYYGFYLQDLMTLNEQWKLLAGVRYDEQKKDAIGGNSYAVSPKFGVIYSPMANGSIYINYSKS
FTPQGSVTSSEDVNEGDNLKPEYGTQYELGTKWELFDDSLLLTAALFDITVSNVTIEQDIPETSDGKKTITTQGGEQHHR
GFEVGAQGQLGESWFVTSSMMYLDAEYKTGAGKIDGKILDGKTPIDAPEWSANIWTRYEVTDNFAMNFGAIYVGERFADT
NNTISKDGYVRFDIGAAYTMDIMGKDVSLRANVRNLFDTEYLDGGSDKMVTIGQGRNFSVAVEAKF
>Mature_706_residues
MVFKYSVLGLAVGSALMAMPVLAEVASDANIERINVTGRTFNDYKVGTASGAMRGDIDLMDTPQSVNVIPDFVTDEQLAT
NLAEVLVNDSSVTAGTTRWNRQVFSIRGFELDSSNGYLINGHQQWSHYVQPIETLQQVEVLKGPSSMLYGQSGPGGLVNM
VTKKPTYDSMLNLGFDTDGYGSTRAQLDAGGSLNEAQSIRYRGVLVKQDTKYWREYSANDENQERDRWLGYLNMEFDLSD
DLLLSVKYDHTQDKAGIDAGGWLDKQGNVIGERKTVWDAPWAFTDNTVSNLGADLTWHMSDNWKVKAGYNDQQFNRQRFD
SAPSLIEGSEDPFKDGYKIKPFDRYDDWQHKTAYADFTGEFALAGMQHQLLIGANYLDYFYQQQIHRGAAQTVIPGQPIT
QPALDYHTKPKGNASTYKYYGFYLQDLMTLNEQWKLLAGVRYDEQKKDAIGGNSYAVSPKFGVIYSPMANGSIYINYSKS
FTPQGSVTSSEDVNEGDNLKPEYGTQYELGTKWELFDDSLLLTAALFDITVSNVTIEQDIPETSDGKKTITTQGGEQHHR
GFEVGAQGQLGESWFVTSSMMYLDAEYKTGAGKIDGKILDGKTPIDAPEWSANIWTRYEVTDNFAMNFGAIYVGERFADT
NNTISKDGYVRFDIGAAYTMDIMGKDVSLRANVRNLFDTEYLDGGSDKMVTIGQGRNFSVAVEAKF

Specific function: Probably involved in iron transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1786344, Length=762, Percent_Identity=26.1154855643045, Blast_Score=132, Evalue=8e-32,
Organism=Escherichia coli, GI1787344, Length=744, Percent_Identity=22.5806451612903, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1787024, Length=380, Percent_Identity=25, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1790743, Length=690, Percent_Identity=22.8985507246377, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 78731; Mature: 78731

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFKYSVLGLAVGSALMAMPVLAEVASDANIERINVTGRTFNDYKVGTASGAMRGDIDLM
CEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCCCCCCCEEEE
DTPQSVNVIPDFVTDEQLATNLAEVLVNDSSVTAGTTRWNRQVFSIRGFELDSSNGYLIN
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEE
GHQQWSHYVQPIETLQQVEVLKGPSSMLYGQSGPGGLVNMVTKKPTYDSMLNLGFDTDGY
CHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCEEEEEECCCCHHHHHCCCCCCCCC
GSTRAQLDAGGSLNEAQSIRYRGVLVKQDTKYWREYSANDENQERDRWLGYLNMEFDLSD
CCCEEEECCCCCCCHHHHEEEEEEEEECCHHHHHHCCCCCCCCCHHHEEEEEEEEEECCC
DLLLSVKYDHTQDKAGIDAGGWLDKQGNVIGERKTVWDAPWAFTDNTVSNLGADLTWHMS
CEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCEEECCCCCCCCCCHHHCCCCEEEEEC
DNWKVKAGYNDQQFNRQRFDSAPSLIEGSEDPFKDGYKIKPFDRYDDWQHKTAYADFTGE
CCEEEEECCCHHHHHHHHHCCCCCHHCCCCCCCCCCCEECCCCCCCCCCCCEEEECCCCC
FALAGMQHQLLIGANYLDYFYQQQIHRGAAQTVIPGQPITQPALDYHTKPKGNASTYKYY
EEECCCCEEEEEECHHHHHHHHHHHHCCCCCEECCCCCCCCCHHCCCCCCCCCCCEEEEH
GFYLQDLMTLNEQWKLLAGVRYDEQKKDAIGGNSYAVSPKFGVIYSPMANGSIYINYSKS
HHHHHHHHHHCCCCCEEECCCCCCHHHHCCCCCCEEECCCCCEEECCCCCCEEEEEECCC
FTPQGSVTSSEDVNEGDNLKPEYGTQYELGTKWELFDDSLLLTAALFDITVSNVTIEQDI
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEHHHHHEEEECCEEEECCC
PETSDGKKTITTQGGEQHHRGFEVGAQGQLGESWFVTSSMMYLDAEYKTGAGKIDGKILD
CCCCCCCEEEEECCCHHHCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEC
GKTPIDAPEWSANIWTRYEVTDNFAMNFGAIYVGERFADTNNTISKDGYVRFDIGAAYTM
CCCCCCCCCCCCCEEEEEEECCCEEEECCEEEEECEECCCCCCCCCCCEEEEECCCEEEE
DIMGKDVSLRANVRNLFDTEYLDGGSDKMVTIGQGRNFSVAVEAKF
EECCCCEEEEEHHHHHHCHHHCCCCCCCEEEEECCCCEEEEEEECC
>Mature Secondary Structure
MVFKYSVLGLAVGSALMAMPVLAEVASDANIERINVTGRTFNDYKVGTASGAMRGDIDLM
CEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCCCCCCCEEEE
DTPQSVNVIPDFVTDEQLATNLAEVLVNDSSVTAGTTRWNRQVFSIRGFELDSSNGYLIN
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEE
GHQQWSHYVQPIETLQQVEVLKGPSSMLYGQSGPGGLVNMVTKKPTYDSMLNLGFDTDGY
CHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCCEEEEEECCCCHHHHHCCCCCCCCC
GSTRAQLDAGGSLNEAQSIRYRGVLVKQDTKYWREYSANDENQERDRWLGYLNMEFDLSD
CCCEEEECCCCCCCHHHHEEEEEEEEECCHHHHHHCCCCCCCCCHHHEEEEEEEEEECCC
DLLLSVKYDHTQDKAGIDAGGWLDKQGNVIGERKTVWDAPWAFTDNTVSNLGADLTWHMS
CEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCEEECCCCCCCCCCHHHCCCCEEEEEC
DNWKVKAGYNDQQFNRQRFDSAPSLIEGSEDPFKDGYKIKPFDRYDDWQHKTAYADFTGE
CCEEEEECCCHHHHHHHHHCCCCCHHCCCCCCCCCCCEECCCCCCCCCCCCEEEECCCCC
FALAGMQHQLLIGANYLDYFYQQQIHRGAAQTVIPGQPITQPALDYHTKPKGNASTYKYY
EEECCCCEEEEEECHHHHHHHHHHHHCCCCCEECCCCCCCCCHHCCCCCCCCCCCEEEEH
GFYLQDLMTLNEQWKLLAGVRYDEQKKDAIGGNSYAVSPKFGVIYSPMANGSIYINYSKS
HHHHHHHHHHCCCCCEEECCCCCCHHHHCCCCCCEEECCCCCEEECCCCCCEEEEEECCC
FTPQGSVTSSEDVNEGDNLKPEYGTQYELGTKWELFDDSLLLTAALFDITVSNVTIEQDI
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEHHHHHEEEECCEEEECCC
PETSDGKKTITTQGGEQHHRGFEVGAQGQLGESWFVTSSMMYLDAEYKTGAGKIDGKILD
CCCCCCCEEEEECCCHHHCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEC
GKTPIDAPEWSANIWTRYEVTDNFAMNFGAIYVGERFADTNNTISKDGYVRFDIGAAYTM
CCCCCCCCCCCCCEEEEEEECCCEEEECCEEEEECEECCCCCCCCCCCEEEEECCCEEEE
DIMGKDVSLRANVRNLFDTEYLDGGSDKMVTIGQGRNFSVAVEAKF
EECCCCEEEEEHHHHHHCHHHCCCCCCCEEEEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 10079522 [H]