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The map label for this gene is ypdB [H]

Identifier: 126176484

GI number: 126176484

Start: 5034147

End: 5034878

Strand: Reverse

Name: ypdB [H]

Synonym: Sbal_4299

Alternate gene names: 126176484

Gene position: 5034878-5034147 (Counterclockwise)

Preceding gene: 126176485

Following gene: 126176483

Centisome position: 98.2

GC content: 47.68

Gene sequence:

>732_bases
ATGTTAAAAGCCATCATAGTTGAAGATGAATATCTGGCCCGTGAGGAGCTGGAGTATTTAGTAAAGAGCCACAGTGAGAT
AGACATAGTGGCAAGCTTTGAGGATGGCTTGGAGGCCTTTAAATATCTGCAGGATCACGAGGTCGATGTGGTGTTTTTGG
ATATCCAAATTCCGTCCATCGATGGCCTATTGCTGGCGAAGAATCTGCATAAATCGACCCATCCACCCCATGTGGTGTTT
GTGACTGCCTATAAAGAATTTGCGGTAGAAGCGTTCGAGCTTGAAGCTTTTGATTATATTCTCAAGCCTTATAATGAGCC
GCGGATCATCAGTTTATTGCAGAAGATTGAACTGGCGGGGCGGCAAGCGCCAAAGCCGCAACATGAAGCCGCGAGTAATG
CGAGTCGTACCGTGAATTTAGTCAAAGGTGAGCGGATTATCGTTACGCCCTGCGAGCAAATTTATTACGCCGAGGCTGAT
GAAAAACTCACCTATGTCTATACCCGCACCGACCGTTATGTGATGCAGATGACCATTAGCGAGTTTGTCAGCCGCTTGCC
CGCCGAGGGCTTTTTCCGGTGCCACCGTTCCTATTGCGTCAATATCAACAAGATCCGCGAAATCGTGCCTTGGTTCAATA
GCACTTACCTGATCCGCTTGCATGATTTGTCGTTCGAGGTGCCCGTTAGCCGTAGTAATATTAAGGCTTTTCGACAGCTG
ATGAGGCTGTAA

Upstream 100 bases:

>100_bases
ACCAGAGGGTGAAGTTATTGTACGGCGAAGGGCTGCAGCTTAAACGGCTGGAGCCGGGGACTGAAGTCAGCTTTTATTTA
CCGGAAAATGAGGCGCAAGT

Downstream 100 bases:

>100_bases
TTGTCATTCATTCCTGCAGATCTGTATTTCATGCCTTAATTGATCGGCGCGAATGGCATCTCTCTTATAGTGGACTCAAT
TCCTGATCCCCTAAAGCGAG

Product: LytTR family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MLKAIIVEDEYLAREELEYLVKSHSEIDIVASFEDGLEAFKYLQDHEVDVVFLDIQIPSIDGLLLAKNLHKSTHPPHVVF
VTAYKEFAVEAFELEAFDYILKPYNEPRIISLLQKIELAGRQAPKPQHEAASNASRTVNLVKGERIIVTPCEQIYYAEAD
EKLTYVYTRTDRYVMQMTISEFVSRLPAEGFFRCHRSYCVNINKIREIVPWFNSTYLIRLHDLSFEVPVSRSNIKAFRQL
MRL

Sequences:

>Translated_243_residues
MLKAIIVEDEYLAREELEYLVKSHSEIDIVASFEDGLEAFKYLQDHEVDVVFLDIQIPSIDGLLLAKNLHKSTHPPHVVF
VTAYKEFAVEAFELEAFDYILKPYNEPRIISLLQKIELAGRQAPKPQHEAASNASRTVNLVKGERIIVTPCEQIYYAEAD
EKLTYVYTRTDRYVMQMTISEFVSRLPAEGFFRCHRSYCVNINKIREIVPWFNSTYLIRLHDLSFEVPVSRSNIKAFRQL
MRL
>Mature_243_residues
MLKAIIVEDEYLAREELEYLVKSHSEIDIVASFEDGLEAFKYLQDHEVDVVFLDIQIPSIDGLLLAKNLHKSTHPPHVVF
VTAYKEFAVEAFELEAFDYILKPYNEPRIISLLQKIELAGRQAPKPQHEAASNASRTVNLVKGERIIVTPCEQIYYAEAD
EKLTYVYTRTDRYVMQMTISEFVSRLPAEGFFRCHRSYCVNINKIREIVPWFNSTYLIRLHDLSFEVPVSRSNIKAFRQL
MRL

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=244, Percent_Identity=61.8852459016393, Blast_Score=321, Evalue=2e-89,
Organism=Escherichia coli, GI87082052, Length=244, Percent_Identity=31.1475409836066, Blast_Score=117, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28293; Mature: 28293

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKAIIVEDEYLAREELEYLVKSHSEIDIVASFEDGLEAFKYLQDHEVDVVFLDIQIPSI
CCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCEEEEEEEEEECCC
DGLLLAKNLHKSTHPPHVVFVTAYKEFAVEAFELEAFDYILKPYNEPRIISLLQKIELAG
CCEEEEHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
RQAPKPQHEAASNASRTVNLVKGERIIVTPCEQIYYAEADEKLTYVYTRTDRYVMQMTIS
CCCCCCHHHHHCCCHHEEEEEECCEEEEECHHHEEEECCCCEEEEEEEECCHHHHHHHHH
EFVSRLPAEGFFRCHRSYCVNINKIREIVPWFNSTYLIRLHDLSFEVPVSRSNIKAFRQL
HHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECCEEECCCCHHHHHHHHHH
MRL
HCC
>Mature Secondary Structure
MLKAIIVEDEYLAREELEYLVKSHSEIDIVASFEDGLEAFKYLQDHEVDVVFLDIQIPSI
CCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCEEEEEEEEEECCC
DGLLLAKNLHKSTHPPHVVFVTAYKEFAVEAFELEAFDYILKPYNEPRIISLLQKIELAG
CCEEEEHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
RQAPKPQHEAASNASRTVNLVKGERIIVTPCEQIYYAEADEKLTYVYTRTDRYVMQMTIS
CCCCCCHHHHHCCCHHEEEEEECCEEEEECHHHEEEECCCCEEEEEEEECCHHHHHHHHH
EFVSRLPAEGFFRCHRSYCVNINKIREIVPWFNSTYLIRLHDLSFEVPVSRSNIKAFRQL
HHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECCEEECCCCHHHHHHHHHH
MRL
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]