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The map label for this gene is ypdA [H]

Identifier: 126176485

GI number: 126176485

Start: 5034872

End: 5036545

Strand: Reverse

Name: ypdA [H]

Synonym: Sbal_4300

Alternate gene names: 126176485

Gene position: 5036545-5034872 (Counterclockwise)

Preceding gene: 126176499

Following gene: 126176484

Centisome position: 98.23

GC content: 49.94

Gene sequence:

>1674_bases
GTGCTCGAAAATCAAATGATGTTACTGGCGGTATTTGAACGGGCGGCCTTGATGCTGATGACCTTGTTCTTTTTAACCCG
CACTCGACCGTTTCAGCGTTTATTCCAAAAGCGTAATCACACCCCCGCAGAGCTGGTCTCTGTGGCGGCGATATTTTGCT
TATTTGCGGTGTTTAGTACTTATACCGGTATTGAGGTTGAAGGCGCGCTGGTTAACGTGCGCATTATCGCGATTGTTTCC
GGTGGAATTTTATTTGGCCCTTGGGTCGGCATTCCCGCGGGCGTGTTGTCGGGGCTGCATAGATATCTGATTGATATGGA
TGGCGATACTTCTATCCCGTGTTTAATCGCCAGCATAATTGCCGGTCTAATGGCGACCTGGATTTACTACAAATGCCCCA
AATCTAAGTTATGGATTTATGGCATAGTGGCGGGCATGTTGTGCGAAACACTGACCATGTTGTTGATTTGGCTGCTGACA
GAGCCGCACCAAGTGGGCGTAGATATTGTGAGTCACATTGCCTATCCCATGATTGCGGGCACTGTGTGCATCGGACTGAT
TATCAAGCTAGTGCAAGACCTCGACGATGAGAAAGAGCTCATTGCCGCCAAGCAGGCCAAGCTCGCGCTGGATATTGCCA
ACAAAACCTTACCTTTCTTCCGCAAAATTGACCGCCATGCCTTAGAGCAAGTGTGCGGCGTGATCCGCAATGAAATCCAT
GCAGATGCCGTGGCGATTACCGATACTCGCGATGTATTGGCCTATATGGGCGTAGGCAAAGATTACTACGAGGTCGATGG
TCATCAAGCGATTAGCGAGATGACTCAAAGGGCGATAGAGCTAGATCAAAACATTATTAACAACGACTTACGCCAATATC
ATTTATCGGATTTTCATTCGGTCATCATAATCCCGCTGCGTGAAAACGGCACTGTGAGCGGCACGTTGAAGATTTATTAT
CGTAATACCTATCGGATTACCAGCTCGCTGCGGGAAATGGCGGTGGGCTTGTCGCAGTTGATTTCGACCCAGATGGAAGT
GTCGCGTATCGAGCAACTGCAGGAGATGACCCGCAAGGCGGAGTTTACTGCGCTGCAGAGCAAGATTAACCCGCACTTTT
TGTTTAATGCCCTCAATGCGATTTCTTCTTTGATCCGTATTCGGCCGCAGCAGGCGCGGGAGTTGATTGCTAATCTGGCC
GATTATCTGCGCTATAACCTAGCCAAGGGCGATGAGCTGATTGATATCCAAGAGGAAGTCAAACAAGTACGCGATTATGT
GGCGATCGAGCAGGCGCGCTTTGGCGATAAGCTTGAAGTGGTGTTCGATGTCGACGATGTGCATTTTTGTGTACCTTGCC
TCTTGTTGCAGCCGCTGGTGGAAAACGCCATTTTGCACGGCATTCAGCCACGTAGTGCACCGGGCAGAGTGACCATAGAA
GTGAAAAAACTCGATGCTGGCATTCGCGTGGCCGTGCGTGACACTGGTTATGGCATCAGCCAAGAGGTGATAGATGGCGT
CGCCGCGGGTCGCATAGAAAGCAGCAGTATTGGGCTGATGAATGTGCACCAGAGGGTGAAGTTATTGTACGGCGAAGGGC
TGCAGCTTAAACGGCTGGAGCCGGGGACTGAAGTCAGCTTTTATTTACCGGAAAATGAGGCGCAAGTATGTTAA

Upstream 100 bases:

>100_bases
CTAAGCCGTAATCCATTCAGCATACTGCTTAACACTAACACAGATAGAATTCACATATAGAATTAGGCTGTCACTCAGCG
TGATTGATTAAGGGGAAAGC

Downstream 100 bases:

>100_bases
AAGCCATCATAGTTGAAGATGAATATCTGGCCCGTGAGGAGCTGGAGTATTTAGTAAAGAGCCACAGTGAGATAGACATA
GTGGCAAGCTTTGAGGATGG

Product: signal transduction histidine kinase, LytS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 557

Protein sequence:

>557_residues
MLENQMMLLAVFERAALMLMTLFFLTRTRPFQRLFQKRNHTPAELVSVAAIFCLFAVFSTYTGIEVEGALVNVRIIAIVS
GGILFGPWVGIPAGVLSGLHRYLIDMDGDTSIPCLIASIIAGLMATWIYYKCPKSKLWIYGIVAGMLCETLTMLLIWLLT
EPHQVGVDIVSHIAYPMIAGTVCIGLIIKLVQDLDDEKELIAAKQAKLALDIANKTLPFFRKIDRHALEQVCGVIRNEIH
ADAVAITDTRDVLAYMGVGKDYYEVDGHQAISEMTQRAIELDQNIINNDLRQYHLSDFHSVIIIPLRENGTVSGTLKIYY
RNTYRITSSLREMAVGLSQLISTQMEVSRIEQLQEMTRKAEFTALQSKINPHFLFNALNAISSLIRIRPQQARELIANLA
DYLRYNLAKGDELIDIQEEVKQVRDYVAIEQARFGDKLEVVFDVDDVHFCVPCLLLQPLVENAILHGIQPRSAPGRVTIE
VKKLDAGIRVAVRDTGYGISQEVIDGVAAGRIESSSIGLMNVHQRVKLLYGEGLQLKRLEPGTEVSFYLPENEAQVC

Sequences:

>Translated_557_residues
MLENQMMLLAVFERAALMLMTLFFLTRTRPFQRLFQKRNHTPAELVSVAAIFCLFAVFSTYTGIEVEGALVNVRIIAIVS
GGILFGPWVGIPAGVLSGLHRYLIDMDGDTSIPCLIASIIAGLMATWIYYKCPKSKLWIYGIVAGMLCETLTMLLIWLLT
EPHQVGVDIVSHIAYPMIAGTVCIGLIIKLVQDLDDEKELIAAKQAKLALDIANKTLPFFRKIDRHALEQVCGVIRNEIH
ADAVAITDTRDVLAYMGVGKDYYEVDGHQAISEMTQRAIELDQNIINNDLRQYHLSDFHSVIIIPLRENGTVSGTLKIYY
RNTYRITSSLREMAVGLSQLISTQMEVSRIEQLQEMTRKAEFTALQSKINPHFLFNALNAISSLIRIRPQQARELIANLA
DYLRYNLAKGDELIDIQEEVKQVRDYVAIEQARFGDKLEVVFDVDDVHFCVPCLLLQPLVENAILHGIQPRSAPGRVTIE
VKKLDAGIRVAVRDTGYGISQEVIDGVAAGRIESSSIGLMNVHQRVKLLYGEGLQLKRLEPGTEVSFYLPENEAQVC
>Mature_557_residues
MLENQMMLLAVFERAALMLMTLFFLTRTRPFQRLFQKRNHTPAELVSVAAIFCLFAVFSTYTGIEVEGALVNVRIIAIVS
GGILFGPWVGIPAGVLSGLHRYLIDMDGDTSIPCLIASIIAGLMATWIYYKCPKSKLWIYGIVAGMLCETLTMLLIWLLT
EPHQVGVDIVSHIAYPMIAGTVCIGLIIKLVQDLDDEKELIAAKQAKLALDIANKTLPFFRKIDRHALEQVCGVIRNEIH
ADAVAITDTRDVLAYMGVGKDYYEVDGHQAISEMTQRAIELDQNIINNDLRQYHLSDFHSVIIIPLRENGTVSGTLKIYY
RNTYRITSSLREMAVGLSQLISTQMEVSRIEQLQEMTRKAEFTALQSKINPHFLFNALNAISSLIRIRPQQARELIANLA
DYLRYNLAKGDELIDIQEEVKQVRDYVAIEQARFGDKLEVVFDVDDVHFCVPCLLLQPLVENAILHGIQPRSAPGRVTIE
VKKLDAGIRVAVRDTGYGISQEVIDGVAAGRIESSSIGLMNVHQRVKLLYGEGLQLKRLEPGTEVSFYLPENEAQVC

Specific function: Unknown

COG id: COG3275

COG function: function code T; Putative regulator of cell autolysis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=552, Percent_Identity=59.963768115942, Blast_Score=673, Evalue=0.0,
Organism=Escherichia coli, GI1788446, Length=564, Percent_Identity=29.2553191489362, Blast_Score=205, Evalue=8e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: 2.7.3.-

Molecular weight: Translated: 62363; Mature: 62363

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLENQMMLLAVFERAALMLMTLFFLTRTRPFQRLFQKRNHTPAELVSVAAIFCLFAVFST
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YTGIEVEGALVNVRIIAIVSGGILFGPWVGIPAGVLSGLHRYLIDMDGDTSIPCLIASII
CCCCEEECEEEEEEEEEEEECCEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
AGLMATWIYYKCPKSKLWIYGIVAGMLCETLTMLLIWLLTEPHQVGVDIVSHIAYPMIAG
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TVCIGLIIKLVQDLDDEKELIAAKQAKLALDIANKTLPFFRKIDRHALEQVCGVIRNEIH
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ADAVAITDTRDVLAYMGVGKDYYEVDGHQAISEMTQRAIELDQNIINNDLRQYHLSDFHS
CCEEEEECHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VIIIPLRENGTVSGTLKIYYRNTYRITSSLREMAVGLSQLISTQMEVSRIEQLQEMTRKA
EEEEEEECCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFTALQSKINPHFLFNALNAISSLIRIRPQQARELIANLADYLRYNLAKGDELIDIQEEV
HHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHH
KQVRDYVAIEQARFGDKLEVVFDVDDVHFCVPCLLLQPLVENAILHGIQPRSAPGRVTIE
HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
VKKLDAGIRVAVRDTGYGISQEVIDGVAAGRIESSSIGLMNVHQRVKLLYGEGLQLKRLE
EEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEECC
PGTEVSFYLPENEAQVC
CCCEEEEEECCCCCCCC
>Mature Secondary Structure
MLENQMMLLAVFERAALMLMTLFFLTRTRPFQRLFQKRNHTPAELVSVAAIFCLFAVFST
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YTGIEVEGALVNVRIIAIVSGGILFGPWVGIPAGVLSGLHRYLIDMDGDTSIPCLIASII
CCCCEEECEEEEEEEEEEEECCEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
AGLMATWIYYKCPKSKLWIYGIVAGMLCETLTMLLIWLLTEPHQVGVDIVSHIAYPMIAG
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TVCIGLIIKLVQDLDDEKELIAAKQAKLALDIANKTLPFFRKIDRHALEQVCGVIRNEIH
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ADAVAITDTRDVLAYMGVGKDYYEVDGHQAISEMTQRAIELDQNIINNDLRQYHLSDFHS
CCEEEEECHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VIIIPLRENGTVSGTLKIYYRNTYRITSSLREMAVGLSQLISTQMEVSRIEQLQEMTRKA
EEEEEEECCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFTALQSKINPHFLFNALNAISSLIRIRPQQARELIANLADYLRYNLAKGDELIDIQEEV
HHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHH
KQVRDYVAIEQARFGDKLEVVFDVDDVHFCVPCLLLQPLVENAILHGIQPRSAPGRVTIE
HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
VKKLDAGIRVAVRDTGYGISQEVIDGVAAGRIESSSIGLMNVHQRVKLLYGEGLQLKRLE
EEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEECC
PGTEVSFYLPENEAQVC
CCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]