| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is yhjX [H]
Identifier: 126176483
GI number: 126176483
Start: 5032795
End: 5034039
Strand: Reverse
Name: yhjX [H]
Synonym: Sbal_4298
Alternate gene names: 126176483
Gene position: 5034039-5032795 (Counterclockwise)
Preceding gene: 126176484
Following gene: 126176482
Centisome position: 98.18
GC content: 50.28
Gene sequence:
>1245_bases ATGACTAAAGAGATGAACCGTACTCGGTACCTGACCTTAGTTGGTACTATTATCACCCAGTTTGCACTCGGCTCAGTTTA CACTTGGAGCCTGTTCAATGCGCAGTTGGCCGCGAAGCTCGACGAGCCAGTCAGCCAAGTGGCGTTTGTATTTGGTTTGC TGAGTCTGTCTTTGGCCGTGGCGTCTTCCATGGCGGGCAAATTACAGGAACGCTTCGGCGTGCGTAATGTCACCTTAGGT GCAGGCCTATTACTCGGGCTGGGATTTTTACTCACTGCCCAAGCCAGTAACTTAATGATGCTTTACCTGTGTGCCGGGAT TTTAGTGGGCTTTGCCGATGGTACTGGCTACTTGATGACCTTGTCTAACTGCGTGAAGTGGTTCCCCGAGCGCAAAGGGC TGATTTCGGCGTTAGCGATTGGCGCTTATGGTCTAGGTAGCCTTGGATTTAAGTACATCAACGTGCTGTTACTCGAAAAT ACTGGCCTTGAAACCACCTTCCAACTGTGGGGCCTGATCGCCATGGCGCTGGTGTTATGTGGCGGCATGTTGATGAAAGA TGCGCCAGCACAATCAGCCGCAAGTCAGCTGGCCGAAAGCCGCGACTTCACCCTCGCAGAAGCCATGCGTAAACCGCAAT ATTGGATGTTGGCGCTGATGTTCCTGTCGGCCTGTATGAGTGGTTTGTATGTGATTGGTGTAGCGAAAGATATCGGCGAG AAGATGGTCGACTTGCCAGTACTGGTCGCTGCTAATGCGGTTGCGGTAATTGCCATGGCGAATCTCAGTGGTCGTTTGGT GCTGGGTATCCTGTCGGACAAAATTCCTCGCATTCGAGTTATTTCTCTGGCGCAGATCATCACCTTAGTCGGTATGGTGT TACTGCTGTTCATCCCTTTGAATGCTAACCTGTTCTTCGTCGCCGTTGCCTGCGTTGCCTTTAGTTTTGGTGGCACTATT ACTGTTTATCCATCACTGGTGAGCGACTTCTTCGGCCTGAATAACCTGACTAAAAACTATGGGGTTATCTACTTAGGTTT TGGTGTCGGCAGCATTATCGGTTCGATTGTCGCCTCGTTATTCGGTGGCTTTATTGCGACCTTCAACGTGATTTTAGTGC TGCTGGTGGTGGCGTTAGTGATGTCATTAACCATACGTATGCCAGAGCCTAAAACCCCAGTGTCAGCCAAAAAAGCGACT AAGAGTACACCGCGCTTAGTGAACATGACGGCAGAATCGGCGTAA
Upstream 100 bases:
>100_bases TCATTCCTGCAGATCTGTATTTCATGCCTTAATTGATCGGCGCGAATGGCATCTCTCTTATAGTGGACTCAATTCCTGAT CCCCTAAAGCGAGATGCATC
Downstream 100 bases:
>100_bases GCACAAACACTTAGTCCGGCTTAGCCAAAAGCTAAAACAAAAATCCGCAGCCAAATGGTTGCGGATTTTTTGCTTTTTTA TCACCTCAACAACAGGTAAC
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 414; Mature: 413
Protein sequence:
>414_residues MTKEMNRTRYLTLVGTIITQFALGSVYTWSLFNAQLAAKLDEPVSQVAFVFGLLSLSLAVASSMAGKLQERFGVRNVTLG AGLLLGLGFLLTAQASNLMMLYLCAGILVGFADGTGYLMTLSNCVKWFPERKGLISALAIGAYGLGSLGFKYINVLLLEN TGLETTFQLWGLIAMALVLCGGMLMKDAPAQSAASQLAESRDFTLAEAMRKPQYWMLALMFLSACMSGLYVIGVAKDIGE KMVDLPVLVAANAVAVIAMANLSGRLVLGILSDKIPRIRVISLAQIITLVGMVLLLFIPLNANLFFVAVACVAFSFGGTI TVYPSLVSDFFGLNNLTKNYGVIYLGFGVGSIIGSIVASLFGGFIATFNVILVLLVVALVMSLTIRMPEPKTPVSAKKAT KSTPRLVNMTAESA
Sequences:
>Translated_414_residues MTKEMNRTRYLTLVGTIITQFALGSVYTWSLFNAQLAAKLDEPVSQVAFVFGLLSLSLAVASSMAGKLQERFGVRNVTLG AGLLLGLGFLLTAQASNLMMLYLCAGILVGFADGTGYLMTLSNCVKWFPERKGLISALAIGAYGLGSLGFKYINVLLLEN TGLETTFQLWGLIAMALVLCGGMLMKDAPAQSAASQLAESRDFTLAEAMRKPQYWMLALMFLSACMSGLYVIGVAKDIGE KMVDLPVLVAANAVAVIAMANLSGRLVLGILSDKIPRIRVISLAQIITLVGMVLLLFIPLNANLFFVAVACVAFSFGGTI TVYPSLVSDFFGLNNLTKNYGVIYLGFGVGSIIGSIVASLFGGFIATFNVILVLLVVALVMSLTIRMPEPKTPVSAKKAT KSTPRLVNMTAESA >Mature_413_residues TKEMNRTRYLTLVGTIITQFALGSVYTWSLFNAQLAAKLDEPVSQVAFVFGLLSLSLAVASSMAGKLQERFGVRNVTLGA GLLLGLGFLLTAQASNLMMLYLCAGILVGFADGTGYLMTLSNCVKWFPERKGLISALAIGAYGLGSLGFKYINVLLLENT GLETTFQLWGLIAMALVLCGGMLMKDAPAQSAASQLAESRDFTLAEAMRKPQYWMLALMFLSACMSGLYVIGVAKDIGEK MVDLPVLVAANAVAVIAMANLSGRLVLGILSDKIPRIRVISLAQIITLVGMVLLLFIPLNANLFFVAVACVAFSFGGTIT VYPSLVSDFFGLNNLTKNYGVIYLGFGVGSIIGSIVASLFGGFIATFNVILVLLVVALVMSLTIRMPEPKTPVSAKKATK STPRLVNMTAESA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI42475555, Length=358, Percent_Identity=25.9776536312849, Blast_Score=72, Evalue=1e-12, Organism=Escherichia coli, GI1789969, Length=387, Percent_Identity=72.0930232558139, Blast_Score=556, Evalue=1e-160,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR004741 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 44057; Mature: 43926
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKEMNRTRYLTLVGTIITQFALGSVYTWSLFNAQLAAKLDEPVSQVAFVFGLLSLSLAV CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASSMAGKLQERFGVRNVTLGAGLLLGLGFLLTAQASNLMMLYLCAGILVGFADGTGYLMT HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHH LSNCVKWFPERKGLISALAIGAYGLGSLGFKYINVLLLENTGLETTFQLWGLIAMALVLC HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHH GGMLMKDAPAQSAASQLAESRDFTLAEAMRKPQYWMLALMFLSACMSGLYVIGVAKDIGE CCHHHCCCCHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHH KMVDLPVLVAANAVAVIAMANLSGRLVLGILSDKIPRIRVISLAQIITLVGMVLLLFIPL HHHCCHHHHHHHHHHHHHEECCCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC NANLFFVAVACVAFSFGGTITVYPSLVSDFFGLNNLTKNYGVIYLGFGVGSIIGSIVASL CCCHHHHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHH FGGFIATFNVILVLLVVALVMSLTIRMPEPKTPVSAKKATKSTPRLVNMTAESA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEEECCCCC >Mature Secondary Structure TKEMNRTRYLTLVGTIITQFALGSVYTWSLFNAQLAAKLDEPVSQVAFVFGLLSLSLAV CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASSMAGKLQERFGVRNVTLGAGLLLGLGFLLTAQASNLMMLYLCAGILVGFADGTGYLMT HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHH LSNCVKWFPERKGLISALAIGAYGLGSLGFKYINVLLLENTGLETTFQLWGLIAMALVLC HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHH GGMLMKDAPAQSAASQLAESRDFTLAEAMRKPQYWMLALMFLSACMSGLYVIGVAKDIGE CCHHHCCCCHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHH KMVDLPVLVAANAVAVIAMANLSGRLVLGILSDKIPRIRVISLAQIITLVGMVLLLFIPL HHHCCHHHHHHHHHHHHHEECCCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC NANLFFVAVACVAFSFGGTITVYPSLVSDFFGLNNLTKNYGVIYLGFGVGSIIGSIVASL CCCHHHHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHH FGGFIATFNVILVLLVVALVMSLTIRMPEPKTPVSAKKATKSTPRLVNMTAESA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]