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The map label for this gene is yedS [C]

Identifier: 126176272

GI number: 126176272

Start: 4794201

End: 4795355

Strand: Direct

Name: yedS [C]

Synonym: Sbal_4086

Alternate gene names: 126176272

Gene position: 4794201-4795355 (Clockwise)

Preceding gene: 126176271

Following gene: 126176274

Centisome position: 93.5

GC content: 49.0

Gene sequence:

>1155_bases
ATGAATAAGACTTGTCTCGCCTTAGTGTTACCTATGCTATTAACGGCCACCAGCAGTCAGGCGGTTGAGCTTTATAAAGA
TCAAAAAAATACATTAGATTTAACCGGTTGGTTGGGGTTTGCCGCCCTGAATGACAGCCACGATACCTCGGTTATCGACG
ATTCATCACGCTTAAGATTTAGCTTCGAGCGCAGTGAGAGAAACGGCTGGACCGCCTTCGCCACCACAGAATGGGGGATC
AATATGGTCTCCAGCGACGATGGCCTAGTGATGCAAGGGGGCAAACTCGCTGCCGAAAAGACCGATGATTTTCTCTATAA
CCGCTTAGGTTATGTCGGCATGTCCCACGATGTCTGGGGGAGTTTGAGCTTCGGTAAACAATGGGGCGCTTATTACGATG
TCGCCGGCACCACAGATTTACCCAACGTTTTCGCAGGTTACAGCGTTGGTGCTTACACCTTTGGCGATGGCGGCCTCACT
GGCACTGGCCGTGCCGACTCCGCCTTTATTTACCGCAATAGTGTCGGCCCAGTGCAAATTGCCCTGCAATATGCCGCCAA
AACCAATGGCGATGTCAGCTTAAAAAATGATGACGGCAGCGAGATGAGTAACTCTGAGTTGAGTTTCGACAGCAGTTACG
GCGCCAGCATCACCTATGCGGCAACCGACAAATTCAAGCTACTCGCAGGCTTTAACCGCGGTGATTTTGAAGGCCACTTA
GGTAATACCCAAGTCGATGAGACCAATGAAATTATTGGCATTGGTGCCATGTACGGTGACTACTATCACTATGCAGAAGG
ACGCGAAGCCAGCGGTCTTTATGTGGGTTTTAACGCTCACCAAAGCAAAAGCAATGAACTGGTCAACGGCGACCTCTACG
ACGCCACTGGTGCCGAGTTGATGACAGCCTATCAATTCGACAACGGTTTTGTACCTATGGTCGTACTCAGTTATTTAGAT
TTAGACACAGATGCAACTACGCCCATCCAAGGTAATTGGACCCGCCAATTTGCCATGCTGGGTCTGCACTATCGCTATAG
CAACGATACCGTGATGTTTGCCGAAATGAAGTTAGATTTCAGTGATATGGATGATGCCGCACTCGAAGCACAGGAAGACA
ACAGCTTCGCAGTCGGGATTAATTACTTCTTTTAA

Upstream 100 bases:

>100_bases
CGAAAACGATTAATCACACCATCTAAAAGAACGGTTACTCAGGAATCATAGGTTAAGCCTATGATCCCCTGGAGAATACT
TGCTCATTATCGAGGGATTT

Downstream 100 bases:

>100_bases
GGCTCAAGGGAATTTGACTAAGGTGGCTAAAGCGCTCATTCAACTTTGGCATTCCTTGGTCGCATGTGGCAGAACTGTTT
TGAGTAACAGTCTCAGTAAA

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MNKTCLALVLPMLLTATSSQAVELYKDQKNTLDLTGWLGFAALNDSHDTSVIDDSSRLRFSFERSERNGWTAFATTEWGI
NMVSSDDGLVMQGGKLAAEKTDDFLYNRLGYVGMSHDVWGSLSFGKQWGAYYDVAGTTDLPNVFAGYSVGAYTFGDGGLT
GTGRADSAFIYRNSVGPVQIALQYAAKTNGDVSLKNDDGSEMSNSELSFDSSYGASITYAATDKFKLLAGFNRGDFEGHL
GNTQVDETNEIIGIGAMYGDYYHYAEGREASGLYVGFNAHQSKSNELVNGDLYDATGAELMTAYQFDNGFVPMVVLSYLD
LDTDATTPIQGNWTRQFAMLGLHYRYSNDTVMFAEMKLDFSDMDDAALEAQEDNSFAVGINYFF

Sequences:

>Translated_384_residues
MNKTCLALVLPMLLTATSSQAVELYKDQKNTLDLTGWLGFAALNDSHDTSVIDDSSRLRFSFERSERNGWTAFATTEWGI
NMVSSDDGLVMQGGKLAAEKTDDFLYNRLGYVGMSHDVWGSLSFGKQWGAYYDVAGTTDLPNVFAGYSVGAYTFGDGGLT
GTGRADSAFIYRNSVGPVQIALQYAAKTNGDVSLKNDDGSEMSNSELSFDSSYGASITYAATDKFKLLAGFNRGDFEGHL
GNTQVDETNEIIGIGAMYGDYYHYAEGREASGLYVGFNAHQSKSNELVNGDLYDATGAELMTAYQFDNGFVPMVVLSYLD
LDTDATTPIQGNWTRQFAMLGLHYRYSNDTVMFAEMKLDFSDMDDAALEAQEDNSFAVGINYFF
>Mature_384_residues
MNKTCLALVLPMLLTATSSQAVELYKDQKNTLDLTGWLGFAALNDSHDTSVIDDSSRLRFSFERSERNGWTAFATTEWGI
NMVSSDDGLVMQGGKLAAEKTDDFLYNRLGYVGMSHDVWGSLSFGKQWGAYYDVAGTTDLPNVFAGYSVGAYTFGDGGLT
GTGRADSAFIYRNSVGPVQIALQYAAKTNGDVSLKNDDGSEMSNSELSFDSSYGASITYAATDKFKLLAGFNRGDFEGHL
GNTQVDETNEIIGIGAMYGDYYHYAEGREASGLYVGFNAHQSKSNELVNGDLYDATGAELMTAYQFDNGFVPMVVLSYLD
LDTDATTPIQGNWTRQFAMLGLHYRYSNDTVMFAEMKLDFSDMDDAALEAQEDNSFAVGINYFF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 42052; Mature: 42052

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTCLALVLPMLLTATSSQAVELYKDQKNTLDLTGWLGFAALNDSHDTSVIDDSSRLRF
CCCHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCEECCCCEEEE
SFERSERNGWTAFATTEWGINMVSSDDGLVMQGGKLAAEKTDDFLYNRLGYVGMSHDVWG
EEEECCCCCEEEEEEECCCCEEEECCCCEEEECCEEECCCHHHHHHHHHHHCCCCCCCCE
SLSFGKQWGAYYDVAGTTDLPNVFAGYSVGAYTFGDGGLTGTGRADSAFIYRNSVGPVQI
ECCCCCCCCCEEECCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCEEE
ALQYAAKTNGDVSLKNDDGSEMSNSELSFDSSYGASITYAATDKFKLLAGFNRGDFEGHL
EEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCC
GNTQVDETNEIIGIGAMYGDYYHYAEGREASGLYVGFNAHQSKSNELVNGDLYDATGAEL
CCCCCCCCCCEEEEEEECCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCE
MTAYQFDNGFVPMVVLSYLDLDTDATTPIQGNWTRQFAMLGLHYRYSNDTVMFAEMKLDF
EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEECC
SDMDDAALEAQEDNSFAVGINYFF
CCCCCHHEECCCCCCEEEEEEECC
>Mature Secondary Structure
MNKTCLALVLPMLLTATSSQAVELYKDQKNTLDLTGWLGFAALNDSHDTSVIDDSSRLRF
CCCHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCEECCCCEEEE
SFERSERNGWTAFATTEWGINMVSSDDGLVMQGGKLAAEKTDDFLYNRLGYVGMSHDVWG
EEEECCCCCEEEEEEECCCCEEEECCCCEEEECCEEECCCHHHHHHHHHHHCCCCCCCCE
SLSFGKQWGAYYDVAGTTDLPNVFAGYSVGAYTFGDGGLTGTGRADSAFIYRNSVGPVQI
ECCCCCCCCCEEECCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCEEE
ALQYAAKTNGDVSLKNDDGSEMSNSELSFDSSYGASITYAATDKFKLLAGFNRGDFEGHL
EEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCC
GNTQVDETNEIIGIGAMYGDYYHYAEGREASGLYVGFNAHQSKSNELVNGDLYDATGAEL
CCCCCCCCCCEEEEEEECCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCE
MTAYQFDNGFVPMVVLSYLDLDTDATTPIQGNWTRQFAMLGLHYRYSNDTVMFAEMKLDF
EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEECC
SDMDDAALEAQEDNSFAVGINYFF
CCCCCHHEECCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]