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The map label for this gene is rpoX [H]

Identifier: 126175864

GI number: 126175864

Start: 4289392

End: 4289679

Strand: Direct

Name: rpoX [H]

Synonym: Sbal_3669

Alternate gene names: 126175864

Gene position: 4289392-4289679 (Clockwise)

Preceding gene: 126175863

Following gene: 126175865

Centisome position: 83.66

GC content: 39.93

Gene sequence:

>288_bases
ATGCAAATAAACCTGAGTGGACACCATGTCGAAATTACCGAATCGTTACGCGCATATGTAGAAGAAAAGTTTTCAAAACT
TGAACGCCATTTCGAACAGATCAATAATGTGCACGTTGTGCTCAATGTCGAGAAAATGCAACAGATTGCCGAAGCGAGAA
TAAATCTTATCGGTGGTGAAGTTTTTGCTACTTCAGAGCATGCTGACATGTATGCCGCTATAGACGCCCTGATTGACAAG
CTTGATCGTCAGGTTATTAAACACAAAGAGAAGTTAACAAAACACTAA

Upstream 100 bases:

>100_bases
GCCCGCAGAACCATTGCGAAGTACCGAGAGGCTATGCTCATTCCGCCTTCTAATCAGCGTAAAAGTTTATAACCTACAGT
GGATATCGGAGGACGTTTCT

Downstream 100 bases:

>100_bases
TAATGGAACTTTGTACCATACTGCGGCCGGAGTGCACTACCTGCGCCACTCCGGGCAGCAAGAAAAAGGTACTGGAACTC
ATCAGCGACTTAGTCGCTGC

Product: sigma 54 modulation protein/ribosomal protein S30EA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MQINLSGHHVEITESLRAYVEEKFSKLERHFEQINNVHVVLNVEKMQQIAEARINLIGGEVFATSEHADMYAAIDALIDK
LDRQVIKHKEKLTKH

Sequences:

>Translated_95_residues
MQINLSGHHVEITESLRAYVEEKFSKLERHFEQINNVHVVLNVEKMQQIAEARINLIGGEVFATSEHADMYAAIDALIDK
LDRQVIKHKEKLTKH
>Mature_95_residues
MQINLSGHHVEITESLRAYVEEKFSKLERHFEQINNVHVVLNVEKMQQIAEARINLIGGEVFATSEHADMYAAIDALIDK
LDRQVIKHKEKLTKH

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=95, Percent_Identity=55.7894736842105, Blast_Score=113, Evalue=2e-27,
Organism=Escherichia coli, GI1788949, Length=91, Percent_Identity=37.3626373626374, Blast_Score=69, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 10990; Mature: 10990

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQINLSGHHVEITESLRAYVEEKFSKLERHFEQINNVHVVLNVEKMQQIAEARINLIGGE
CEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHCCC
VFATSEHADMYAAIDALIDKLDRQVIKHKEKLTKH
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQINLSGHHVEITESLRAYVEEKFSKLERHFEQINNVHVVLNVEKMQQIAEARINLIGGE
CEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHCCC
VFATSEHADMYAAIDALIDKLDRQVIKHKEKLTKH
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2602128; 12534463 [H]