| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is yeiJ [C]
Identifier: 126175429
GI number: 126175429
Start: 3785228
End: 3786487
Strand: Reverse
Name: yeiJ [C]
Synonym: Sbal_3229
Alternate gene names: 126175429
Gene position: 3786487-3785228 (Counterclockwise)
Preceding gene: 126175430
Following gene: 126175428
Centisome position: 73.85
GC content: 45.0
Gene sequence:
>1260_bases ATGAATATATTGATGAGTTTAGTAGGGGTGGTCACCCTACTTGCGATAGGTTTCCTCCTATCGAATAACAAAAAAGCAAT TAATTTACGTACAGTGGGTGGCGCTTTAGCTATCCAGGCCGCTTTCGGTGGTTTTGTACTGTGCGTTCCTGTTGGTAAAG ACATTCTGAAAGGTATGTCTGATGCAGTTTCTAGCGTTATTGGTTACGCACAAAACGGTATCGGTTTCCTGTTTGGTGAT TTAGCTAACTTTAAACTTGGCTTCATCTTCGCAGTTAACGTGTTACCCGTTATTGTGTTCTTCTCTTCATTGATTGCTGT GCTTTATTACTTAGGCATTATGCAGTGGGTTATCCGTATTATCGGTGGCGCATTACAAAAGTTACTGGGTACTAGCCGTA CAGAATCAATGTCAGCAACAGCTAACATCTTCGTGGGTCAAACTGAAGCACCATTAGTGGTTCGTCCATTCATTCCTACT ATGACGCAGTCTGAACTGTTTGCGATCATGGTGGGTGGTTTGGCGTCAATCGCGGGTTCAGTATTGGCTGGTTATGCGCA GATGGGTGTACCTATCGAGTACCTAGTTGCCGCATCATTCATGGCAGCACCAGGTGGTCTATTAATGGCTAAACTGATGC ACCCTGAAACTGAAGTTGCTAAAAATGACATGGGCGATTTGCCAGAAGATCCTGACAAACCAGCTAACGTATTAGACGCG GCTGCAGCAGGTGCTTCATCTGGTATGCATTTAGCGCTAAACGTAGGTGCTATGCTGTTAGCCTTCGTTGGTTTGATCGC TATGATCAACGGTATCATTGGTGGTATCGGTGGTTGGGTGGGCATGCCTCAGTTAACGCTTGAATTGATCCTTGGCTACA TTTTCATGCCGTTAGCATTCCTTATCGGTGTGCCTTGGAATGAAGCATTAGTAGCAGGTTCATTCATCGGTCAAAAGATC GTAGTTAACGAGTTTGTTGCTTACTTAAACTTTGCTCCATACCTGAAAGACATCGCCGATGGCGGTATTGTTGTGGCTGA AACGGGTTTAGCAATGACTGACAGAACCAAAGCGATTATCTCCTTTGCTCTGTGTGGTTTCGCTAACTTGTCTTCAATCG CGATTCTGCTTGGTGGTTTAGGTGCTATGGCTCCAACTCGTCGCCATGACTTAGCTACAATGGGTATTCGTGCGGTTATC GCCGGCTCTTTAGCTAACTTAATGAGTGCGACACTTGCTGGTCTGTTCTTAGCTATGTAA
Upstream 100 bases:
>100_bases TCAAAACGACGATTTTCGACTTGGGCTCGGGTATAATCTGACTCGGAAATAGGTTGATTAACAACATAATTAAAAAGTGT TAACAATAGGGTGATGGTTA
Downstream 100 bases:
>100_bases GTTAATGAGCGGCAGTCGGGGGAAACCCCACTAACTAGGTCCTGACCATGCAGGGCGGGACCTAAGTTAATTCAACCATT TTCCAGTAGTGATTCCTGTA
Product: nucleoside transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 419
Protein sequence:
>419_residues MNILMSLVGVVTLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLCVPVGKDILKGMSDAVSSVIGYAQNGIGFLFGD LANFKLGFIFAVNVLPVIVFFSSLIAVLYYLGIMQWVIRIIGGALQKLLGTSRTESMSATANIFVGQTEAPLVVRPFIPT MTQSELFAIMVGGLASIAGSVLAGYAQMGVPIEYLVAASFMAAPGGLLMAKLMHPETEVAKNDMGDLPEDPDKPANVLDA AAAGASSGMHLALNVGAMLLAFVGLIAMINGIIGGIGGWVGMPQLTLELILGYIFMPLAFLIGVPWNEALVAGSFIGQKI VVNEFVAYLNFAPYLKDIADGGIVVAETGLAMTDRTKAIISFALCGFANLSSIAILLGGLGAMAPTRRHDLATMGIRAVI AGSLANLMSATLAGLFLAM
Sequences:
>Translated_419_residues MNILMSLVGVVTLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLCVPVGKDILKGMSDAVSSVIGYAQNGIGFLFGD LANFKLGFIFAVNVLPVIVFFSSLIAVLYYLGIMQWVIRIIGGALQKLLGTSRTESMSATANIFVGQTEAPLVVRPFIPT MTQSELFAIMVGGLASIAGSVLAGYAQMGVPIEYLVAASFMAAPGGLLMAKLMHPETEVAKNDMGDLPEDPDKPANVLDA AAAGASSGMHLALNVGAMLLAFVGLIAMINGIIGGIGGWVGMPQLTLELILGYIFMPLAFLIGVPWNEALVAGSFIGQKI VVNEFVAYLNFAPYLKDIADGGIVVAETGLAMTDRTKAIISFALCGFANLSSIAILLGGLGAMAPTRRHDLATMGIRAVI AGSLANLMSATLAGLFLAM >Mature_419_residues MNILMSLVGVVTLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLCVPVGKDILKGMSDAVSSVIGYAQNGIGFLFGD LANFKLGFIFAVNVLPVIVFFSSLIAVLYYLGIMQWVIRIIGGALQKLLGTSRTESMSATANIFVGQTEAPLVVRPFIPT MTQSELFAIMVGGLASIAGSVLAGYAQMGVPIEYLVAASFMAAPGGLLMAKLMHPETEVAKNDMGDLPEDPDKPANVLDA AAAGASSGMHLALNVGAMLLAFVGLIAMINGIIGGIGGWVGMPQLTLELILGYIFMPLAFLIGVPWNEALVAGSFIGQKI VVNEFVAYLNFAPYLKDIADGGIVVAETGLAMTDRTKAIISFALCGFANLSSIAILLGGLGAMAPTRRHDLATMGIRAVI AGSLANLMSATLAGLFLAM
Specific function: Unknown
COG id: COG1972
COG function: function code F; Nucleoside permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family [H]
Homologues:
Organism=Homo sapiens, GI11545853, Length=355, Percent_Identity=43.0985915492958, Blast_Score=298, Evalue=9e-81, Organism=Homo sapiens, GI227116277, Length=414, Percent_Identity=37.6811594202899, Blast_Score=283, Evalue=2e-76, Organism=Homo sapiens, GI42542381, Length=414, Percent_Identity=37.1980676328502, Blast_Score=281, Evalue=6e-76, Organism=Escherichia coli, GI1788485, Length=426, Percent_Identity=47.1830985915493, Blast_Score=364, Evalue=1e-102, Organism=Escherichia coli, GI1788488, Length=426, Percent_Identity=48.5915492957746, Blast_Score=353, Evalue=9e-99, Organism=Escherichia coli, GI1788737, Length=413, Percent_Identity=30.2663438256659, Blast_Score=176, Evalue=2e-45, Organism=Caenorhabditis elegans, GI17560276, Length=404, Percent_Identity=30.6930693069307, Blast_Score=208, Evalue=3e-54, Organism=Caenorhabditis elegans, GI71991794, Length=407, Percent_Identity=30.958230958231, Blast_Score=204, Evalue=5e-53, Organism=Caenorhabditis elegans, GI25146537, Length=194, Percent_Identity=34.020618556701, Blast_Score=115, Evalue=6e-26, Organism=Drosophila melanogaster, GI45552519, Length=415, Percent_Identity=38.5542168674699, Blast_Score=293, Evalue=2e-79, Organism=Drosophila melanogaster, GI45552517, Length=415, Percent_Identity=38.5542168674699, Blast_Score=293, Evalue=2e-79, Organism=Drosophila melanogaster, GI19921868, Length=415, Percent_Identity=38.5542168674699, Blast_Score=293, Evalue=2e-79, Organism=Drosophila melanogaster, GI281360430, Length=411, Percent_Identity=37.4695863746959, Blast_Score=266, Evalue=2e-71,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008276 - InterPro: IPR018270 - InterPro: IPR011642 - InterPro: IPR011657 - InterPro: IPR002668 [H]
Pfam domain/function: PF07670 Gate; PF07662 Nucleos_tra2_C; PF01773 Nucleos_tra2_N [H]
EC number: NA
Molecular weight: Translated: 43438; Mature: 43438
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNILMSLVGVVTLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLCVPVGKDILKGMS CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCEEEEEECCHHHHHHHH DAVSSVIGYAQNGIGFLFGDLANFKLGFIFAVNVLPVIVFFSSLIAVLYYLGIMQWVIRI HHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGGALQKLLGTSRTESMSATANIFVGQTEAPLVVRPFIPTMTQSELFAIMVGGLASIAGS HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH VLAGYAQMGVPIEYLVAASFMAAPGGLLMAKLMHPETEVAKNDMGDLPEDPDKPANVLDA HHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHHH AAAGASSGMHLALNVGAMLLAFVGLIAMINGIIGGIGGWVGMPQLTLELILGYIFMPLAF HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LIGVPWNEALVAGSFIGQKIVVNEFVAYLNFAPYLKDIADGGIVVAETGLAMTDRTKAII HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH SFALCGFANLSSIAILLGGLGAMAPTRRHDLATMGIRAVIAGSLANLMSATLAGLFLAM HHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNILMSLVGVVTLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLCVPVGKDILKGMS CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCEEEEEECCHHHHHHHH DAVSSVIGYAQNGIGFLFGDLANFKLGFIFAVNVLPVIVFFSSLIAVLYYLGIMQWVIRI HHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGGALQKLLGTSRTESMSATANIFVGQTEAPLVVRPFIPTMTQSELFAIMVGGLASIAGS HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH VLAGYAQMGVPIEYLVAASFMAAPGGLLMAKLMHPETEVAKNDMGDLPEDPDKPANVLDA HHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHHH AAAGASSGMHLALNVGAMLLAFVGLIAMINGIIGGIGGWVGMPQLTLELILGYIFMPLAF HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LIGVPWNEALVAGSFIGQKIVVNEFVAYLNFAPYLKDIADGGIVVAETGLAMTDRTKAII HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH SFALCGFANLSSIAILLGGLGAMAPTRRHDLATMGIRAVIAGSLANLMSATLAGLFLAM HHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]