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The map label for this gene is yjjV [H]

Identifier: 126175430

GI number: 126175430

Start: 3786664

End: 3787428

Strand: Reverse

Name: yjjV [H]

Synonym: Sbal_3230

Alternate gene names: 126175430

Gene position: 3787428-3786664 (Counterclockwise)

Preceding gene: 126175431

Following gene: 126175429

Centisome position: 73.87

GC content: 43.4

Gene sequence:

>765_bases
GTGATTGATACCCACGCACATCTAGATTTTGCCGAGTTTGATGTTGACCGCGATGCTGTGGTGCAGAGAATGCGCAGTGT
TGGGGTTAATAATCTGATTATTCCTGGCGTGTCCCCGCAGCACTGGCACAAACAGCTCGCTGTTGCCGAACAATATCAAA
CCTATTTTGCCCTTGGCATCCATCCTTGGTTTTGCCCAGAGGATGTTGATGCAGCGATCTTAGCATTAACATCTAAAGTT
GCCGCGTTGCTCGAGTGTCCTCGTTTTGTTGCTATTGGTGAATGTGGCTTAGATAAGCTTTATTCCTCAACATGGCCACA
GCAGTTAGCGTTTTTTGAGGCGCAACTGACGTTAGCTAAATCCGTTAATCTGCCAGTTATTATCCATAGTGTGAAGGCAC
ATCCCGAGGTTTTGGCCTGTTTAAAAAAGTATCAATTGCCTAGAGGCGGTGTGATACATGCTTTTTCTGGTAGTGTTGAG
ATTGCACAGGAATATATCAAGTTAGGTTTTAAGCTGGGAATTGGTGGTTTGATTATGAATCCCAATGCCAAAAAATTACT
CAAAACTGTCACTGAACTCCCGCTCGAACACCTCATACTTGAGACTGATTCTCCGGCTATGACGCCGATAAATGTTGCAG
AAAAACGTAACCAACCCGCTAACCTTGTTCTTTTTATAGACAAAATTGCCGCTTTGCAAAAAAAATCAAGTGTTCTAATA
TCAGAACACTTGATGTCGAATGTAGCGCAACTGTTTGACCTTTAG

Upstream 100 bases:

>100_bases
TTAGCGGTAAAATGTGCCAAAGCGACTACGGCTGACGAAACTGCATTGCCGCCCGAAGCGCATTCAAACGGCAAATCGAC
CGTAGAGTGAGGTATTTGTA

Downstream 100 bases:

>100_bases
CTGTTTTTAAATAAACAGGTGTAGGTCGCACTAGCATTCTCCACTAAGCGATTGAAATTAAACTCCAAAAATATGATCAA
AACGACGATTTTCGACTTGG

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MIDTHAHLDFAEFDVDRDAVVQRMRSVGVNNLIIPGVSPQHWHKQLAVAEQYQTYFALGIHPWFCPEDVDAAILALTSKV
AALLECPRFVAIGECGLDKLYSSTWPQQLAFFEAQLTLAKSVNLPVIIHSVKAHPEVLACLKKYQLPRGGVIHAFSGSVE
IAQEYIKLGFKLGIGGLIMNPNAKKLLKTVTELPLEHLILETDSPAMTPINVAEKRNQPANLVLFIDKIAALQKKSSVLI
SEHLMSNVAQLFDL

Sequences:

>Translated_254_residues
MIDTHAHLDFAEFDVDRDAVVQRMRSVGVNNLIIPGVSPQHWHKQLAVAEQYQTYFALGIHPWFCPEDVDAAILALTSKV
AALLECPRFVAIGECGLDKLYSSTWPQQLAFFEAQLTLAKSVNLPVIIHSVKAHPEVLACLKKYQLPRGGVIHAFSGSVE
IAQEYIKLGFKLGIGGLIMNPNAKKLLKTVTELPLEHLILETDSPAMTPINVAEKRNQPANLVLFIDKIAALQKKSSVLI
SEHLMSNVAQLFDL
>Mature_254_residues
MIDTHAHLDFAEFDVDRDAVVQRMRSVGVNNLIIPGVSPQHWHKQLAVAEQYQTYFALGIHPWFCPEDVDAAILALTSKV
AALLECPRFVAIGECGLDKLYSSTWPQQLAFFEAQLTLAKSVNLPVIIHSVKAHPEVLACLKKYQLPRGGVIHAFSGSVE
IAQEYIKLGFKLGIGGLIMNPNAKKLLKTVTELPLEHLILETDSPAMTPINVAEKRNQPANLVLFIDKIAALQKKSSVLI
SEHLMSNVAQLFDL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=263, Percent_Identity=30.7984790874525, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI110349730, Length=263, Percent_Identity=30.7984790874525, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI226061853, Length=269, Percent_Identity=30.4832713754647, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI14042943, Length=265, Percent_Identity=26.4150943396226, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=29.6875, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=31.4159292035398, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI225903439, Length=248, Percent_Identity=26.2096774193548, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI225903424, Length=277, Percent_Identity=26.7148014440433, Blast_Score=76, Evalue=2e-14,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=37.2093023255814, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI48994985, Length=264, Percent_Identity=31.4393939393939, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=30.2681992337165, Blast_Score=110, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17559024, Length=286, Percent_Identity=27.2727272727273, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71980746, Length=250, Percent_Identity=29.6, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24648690, Length=286, Percent_Identity=30.7692307692308, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI221330018, Length=197, Percent_Identity=28.9340101522843, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24586117, Length=197, Percent_Identity=28.9340101522843, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28080; Mature: 28080

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDTHAHLDFAEFDVDRDAVVQRMRSVGVNNLIIPGVSPQHWHKQLAVAEQYQTYFALGI
CCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHEECC
HPWFCPEDVDAAILALTSKVAALLECPRFVAIGECGLDKLYSSTWPQQLAFFEAQLTLAK
CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHH
SVNLPVIIHSVKAHPEVLACLKKYQLPRGGVIHAFSGSVEIAQEYIKLGFKLGIGGLIMN
CCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEC
PNAKKLLKTVTELPLEHLILETDSPAMTPINVAEKRNQPANLVLFIDKIAALQKKSSVLI
CCHHHHHHHHHHCCHHHEEEECCCCCCCCCHHHHHCCCCCEEEEEHHHHHHHHHHHHHHH
SEHLMSNVAQLFDL
HHHHHHHHHHHHCC
>Mature Secondary Structure
MIDTHAHLDFAEFDVDRDAVVQRMRSVGVNNLIIPGVSPQHWHKQLAVAEQYQTYFALGI
CCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHEECC
HPWFCPEDVDAAILALTSKVAALLECPRFVAIGECGLDKLYSSTWPQQLAFFEAQLTLAK
CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHH
SVNLPVIIHSVKAHPEVLACLKKYQLPRGGVIHAFSGSVEIAQEYIKLGFKLGIGGLIMN
CCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEC
PNAKKLLKTVTELPLEHLILETDSPAMTPINVAEKRNQPANLVLFIDKIAALQKKSSVLI
CCHHHHHHHHHHCCHHHEEEECCCCCCCCCHHHHHCCCCCEEEEEHHHHHHHHHHHHHHH
SEHLMSNVAQLFDL
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]