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The map label for this gene is ompK [H]

Identifier: 126175428

GI number: 126175428

Start: 3783970

End: 3784875

Strand: Reverse

Name: ompK [H]

Synonym: Sbal_3228

Alternate gene names: 126175428

Gene position: 3784875-3783970 (Counterclockwise)

Preceding gene: 126175429

Following gene: 126175427

Centisome position: 73.82

GC content: 41.61

Gene sequence:

>906_bases
ATGAAAAACGTTAAAACTTTAGCTTTAGCCGCTACTGCTGTAGCTGCAATATCTGGCAACGCATTTGCCGCTGACCGTTC
TGATATCTACGCAACAGATTACAAGTGGATGCAGTTCAACGCTATGTACTCTGTTGATGAGCACCCAATTGCTGATGGTG
CCGATGCTCACCATAACTACTTAGAAATGGAATTTGGCGGCCGTAAAGGTGTTGTTGATCTATATGGTTATGTTGATGTA
TTCAACTTAGGAAACGAAAGCTCTGGCGACAAGACAGATAACGCTAGCAAGATATTTATGAAGTTTGCACCACGTTTCTC
TTTAGATGCCATTACTGGTAAAGATTTATCTTTCGGCCCAGTGCAAGAAGTTTACTTCTCTACACTGTATAACTGGGGTG
GCGGTGGTATCACTGGTGTTCGTCAGAATGATGATCCTACTAAAGATCCTGTAGCTATTGCTGGTGATGTTAACATGTCT
TTCTGGGGTGTCGGTGCTGATGTTATGGTGCCATGGTTAGGTAAGACTGGCATGAACTTATATGCAACTTACGACCTTAA
CACTAAAGACTGGAATGGCTACCAGTTCTCTGCTAACTGGTTCAAACCTTTCTACTTCTTTGATAACAAGAGCTTTCTGT
CATTTCAAGGCTATGTTGATTGGCAGTTTGCAATGGATGAAGATGTAAGTGGCTTGAATGATTTTGGCCGTACAAACAAG
TCTTCAGAAGGTGGTAATGCATTCTTTGGTTTATATTGGCATTCAGACAACTATGCAGTTGGTTATGGCGCTAAGTACTA
TAACAAAGTATATGGTCTAAATAACCAAGCATTCGCGACTGAAAACTGGGGTGGTTTGGATAGCACTGGTTGGGGTCATT
ACTTCACAGCTACTTACAAGTTCTAA

Upstream 100 bases:

>100_bases
ACGCTAGATTATTGAGATTTTTTTTAATCTAGGTAGAATGCGAGCGCCACAAAAAGAACGCTACCCTCGATGGTAGCAAA
CAAGATAAATGGGGTTGATG

Downstream 100 bases:

>100_bases
TTTCTTGTAATGCTAGTTGCTTGTTGGAGCCGCATTATGCGGCTCCATCTTTGTTTTACCATGAGTCTTTATCTCAGCCT
ATTAGGCTAACAAGTGGGTT

Product: nucleoside-specific channel-forming protein Tsx

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MKNVKTLALAATAVAAISGNAFAADRSDIYATDYKWMQFNAMYSVDEHPIADGADAHHNYLEMEFGGRKGVVDLYGYVDV
FNLGNESSGDKTDNASKIFMKFAPRFSLDAITGKDLSFGPVQEVYFSTLYNWGGGGITGVRQNDDPTKDPVAIAGDVNMS
FWGVGADVMVPWLGKTGMNLYATYDLNTKDWNGYQFSANWFKPFYFFDNKSFLSFQGYVDWQFAMDEDVSGLNDFGRTNK
SSEGGNAFFGLYWHSDNYAVGYGAKYYNKVYGLNNQAFATENWGGLDSTGWGHYFTATYKF

Sequences:

>Translated_301_residues
MKNVKTLALAATAVAAISGNAFAADRSDIYATDYKWMQFNAMYSVDEHPIADGADAHHNYLEMEFGGRKGVVDLYGYVDV
FNLGNESSGDKTDNASKIFMKFAPRFSLDAITGKDLSFGPVQEVYFSTLYNWGGGGITGVRQNDDPTKDPVAIAGDVNMS
FWGVGADVMVPWLGKTGMNLYATYDLNTKDWNGYQFSANWFKPFYFFDNKSFLSFQGYVDWQFAMDEDVSGLNDFGRTNK
SSEGGNAFFGLYWHSDNYAVGYGAKYYNKVYGLNNQAFATENWGGLDSTGWGHYFTATYKF
>Mature_301_residues
MKNVKTLALAATAVAAISGNAFAADRSDIYATDYKWMQFNAMYSVDEHPIADGADAHHNYLEMEFGGRKGVVDLYGYVDV
FNLGNESSGDKTDNASKIFMKFAPRFSLDAITGKDLSFGPVQEVYFSTLYNWGGGGITGVRQNDDPTKDPVAIAGDVNMS
FWGVGADVMVPWLGKTGMNLYATYDLNTKDWNGYQFSANWFKPFYFFDNKSFLSFQGYVDWQFAMDEDVSGLNDFGRTNK
SSEGGNAFFGLYWHSDNYAVGYGAKYYNKVYGLNNQAFATENWGGLDSTGWGHYFTATYKF

Specific function: Serves as receptor for a broad-host-range vibriophage, KVP40 [H]

COG id: COG3248

COG function: function code M; Nucleoside-binding outer membrane protein

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli tsx [H]

Homologues:

Organism=Escherichia coli, GI1786612, Length=259, Percent_Identity=30.1158301158301, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018013 [H]

Pfam domain/function: PF03502 Channel_Tsx [H]

EC number: NA

Molecular weight: Translated: 33564; Mature: 33564

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVKTLALAATAVAAISGNAFAADRSDIYATDYKWMQFNAMYSVDEHPIADGADAHHNY
CCCCHHHHHHHHHHHEECCCEEECCCCCEEECCEEEEEEEEEEECCCCCCCCCCCCCCCE
LEMEFGGRKGVVDLYGYVDVFNLGNESSGDKTDNASKIFMKFAPRFSLDAITGKDLSFGP
EEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCHHEEEEEECCCCEEEEECCCCCCCCH
VQEVYFSTLYNWGGGGITGVRQNDDPTKDPVAIAGDVNMSFWGVGADVMVPWLGKTGMNL
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCHHEEEEECCCCCCEE
YATYDLNTKDWNGYQFSANWFKPFYFFDNKSFLSFQGYVDWQFAMDEDVSGLNDFGRTNK
EEEEECCCCCCCCEEEECCCEEEEEEECCCCEEEEECEEEEEEECCCCCCCHHHHCCCCC
SSEGGNAFFGLYWHSDNYAVGYGAKYYNKVYGLNNQAFATENWGGLDSTGWGHYFTATYK
CCCCCCEEEEEEEECCCEEEEECHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEE
F
C
>Mature Secondary Structure
MKNVKTLALAATAVAAISGNAFAADRSDIYATDYKWMQFNAMYSVDEHPIADGADAHHNY
CCCCHHHHHHHHHHHEECCCEEECCCCCEEECCEEEEEEEEEEECCCCCCCCCCCCCCCE
LEMEFGGRKGVVDLYGYVDVFNLGNESSGDKTDNASKIFMKFAPRFSLDAITGKDLSFGP
EEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCHHEEEEEECCCCEEEEECCCCCCCCH
VQEVYFSTLYNWGGGGITGVRQNDDPTKDPVAIAGDVNMSFWGVGADVMVPWLGKTGMNL
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCHHEEEEECCCCCCEE
YATYDLNTKDWNGYQFSANWFKPFYFFDNKSFLSFQGYVDWQFAMDEDVSGLNDFGRTNK
EEEEECCCCCCCCEEEECCCEEEEEEECCCCEEEEECEEEEEEECCCCCCCHHHHCCCCC
SSEGGNAFFGLYWHSDNYAVGYGAKYYNKVYGLNNQAFATENWGGLDSTGWGHYFTATYK
CCCCCCEEEEEEEECCCEEEEECHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEE
F
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8586275 [H]