Click here to switch to the map view.

The map label for this gene is deoC [H]

Identifier: 126175427

GI number: 126175427

Start: 3782778

End: 3783548

Strand: Reverse

Name: deoC [H]

Synonym: Sbal_3227

Alternate gene names: 126175427

Gene position: 3783548-3782778 (Counterclockwise)

Preceding gene: 126175428

Following gene: 126175426

Centisome position: 73.79

GC content: 47.73

Gene sequence:

>771_bases
ATGACTGATTTAAAAAAAGCAGCACAACGCGCCATCGAGTTAATGGACTTAACGACTTTGAATGATGACGACACAGATCA
AAAAGTGATCTACCTGTGCCACAAAGCGAAAACGGCTGCGGGCAATACTGCCGCTATCTGCATTTACCCACGTTTCATCC
CGATTGCACGTAAGACGCTAGATGAAATCGGTGCTGAAGATATCCAAATCGCCACTGTGACTAATTTCCCCCATGGCAAC
GATGACATCGCCATTGCCGTACTAGAAACCCGCGCTGCCGTTGCCTATGGTGCCGACGAAGTTGACGTGGTATTCCCATA
CCGTGCGCTGATGGAAGGCAATGAAACGATTGGTTTTGAATTAGTTAAAGCCTGTAAAGAAGCCTGTGGTGAAGTCTTGT
TAAAAGTCATCATCGAATCTGGCGTGTTAGCTGATCCTGCACTTATCCGCCGTGCATCTGAGCTTTCAATCGATGCGGGT
GCCGACTTTATTAAAACCTCTACGGGTAAAGTGCCTGTAAACGCAACACTCGAAGCGGCTGAGATCATGTTAACTGTGAT
CAGCGAAAAGAATACCCAAGTAGGCTTCAAGCCTGCCGGTGGTGTGCGTGATGCTGCCCAAGCGGCTGAGTTCCTAGGTG
TTGCAGAGCGTATTTTAGGTGCTGACTGGGTTTCACCACGTACCTTTAGATTTGGTGCTTCAAGCCTATTAAACAGCTTG
CTGCACACATTAGAACTAGCTGATGCGCCTAAGCCAACTCAAGGCTATTAA

Upstream 100 bases:

>100_bases
AAGGCCCGGCCATAAAAATAATCAAAATAATGCCACCTCTTATGCGTTGCTTTTATGCGACTGATTTCTATTCATTTAAT
TTTTATTTTGGAGAGCTATT

Downstream 100 bases:

>100_bases
TCGCAAACTGTCGCTGATTAATACTATCAGCGTATAGCGAGCCTAATTAAGTGTGACCTAAATCTATTTGGCAAACTCAA
AACTTCGATAGTATGAACTT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MTDLKKAAQRAIELMDLTTLNDDDTDQKVIYLCHKAKTAAGNTAAICIYPRFIPIARKTLDEIGAEDIQIATVTNFPHGN
DDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETIGFELVKACKEACGEVLLKVIIESGVLADPALIRRASELSIDAG
ADFIKTSTGKVPVNATLEAAEIMLTVISEKNTQVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSL
LHTLELADAPKPTQGY

Sequences:

>Translated_256_residues
MTDLKKAAQRAIELMDLTTLNDDDTDQKVIYLCHKAKTAAGNTAAICIYPRFIPIARKTLDEIGAEDIQIATVTNFPHGN
DDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETIGFELVKACKEACGEVLLKVIIESGVLADPALIRRASELSIDAG
ADFIKTSTGKVPVNATLEAAEIMLTVISEKNTQVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSL
LHTLELADAPKPTQGY
>Mature_255_residues
TDLKKAAQRAIELMDLTTLNDDDTDQKVIYLCHKAKTAAGNTAAICIYPRFIPIARKTLDEIGAEDIQIATVTNFPHGND
DIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETIGFELVKACKEACGEVLLKVIIESGVLADPALIRRASELSIDAGA
DFIKTSTGKVPVNATLEAAEIMLTVISEKNTQVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSLL
HTLELADAPKPTQGY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=250, Percent_Identity=36.8, Blast_Score=152, Evalue=3e-37,
Organism=Escherichia coli, GI1790841, Length=236, Percent_Identity=69.0677966101695, Blast_Score=320, Evalue=4e-89,
Organism=Caenorhabditis elegans, GI17533015, Length=249, Percent_Identity=38.5542168674699, Blast_Score=161, Evalue=3e-40,
Organism=Drosophila melanogaster, GI19922098, Length=256, Percent_Identity=35.15625, Blast_Score=124, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 27394; Mature: 27262

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLKKAAQRAIELMDLTTLNDDDTDQKVIYLCHKAKTAAGNTAAICIYPRFIPIARKTL
CCHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHH
DEIGAEDIQIATVTNFPHGNDDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETIGFE
HHCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCEEEEECHHHHHCCCCCHHHH
LVKACKEACGEVLLKVIIESGVLADPALIRRASELSIDAGADFIKTSTGKVPVNATLEAA
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCHHHHH
EIMLTVISEKNTQVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSL
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHH
LHTLELADAPKPTQGY
HHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TDLKKAAQRAIELMDLTTLNDDDTDQKVIYLCHKAKTAAGNTAAICIYPRFIPIARKTL
CHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHH
DEIGAEDIQIATVTNFPHGNDDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETIGFE
HHCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCEEEEECHHHHHCCCCCHHHH
LVKACKEACGEVLLKVIIESGVLADPALIRRASELSIDAGADFIKTSTGKVPVNATLEAA
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCHHHHH
EIMLTVISEKNTQVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSL
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHH
LHTLELADAPKPTQGY
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA