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The map label for this gene is sseD [H]

Identifier: 126174177

GI number: 126174177

Start: 2268557

End: 2269159

Strand: Direct

Name: sseD [H]

Synonym: Sbal_1953

Alternate gene names: 126174177

Gene position: 2268557-2269159 (Clockwise)

Preceding gene: 126174176

Following gene: 126174178

Centisome position: 44.24

GC content: 46.6

Gene sequence:

>603_bases
ATGACAGACATCAATATTATTTCGGGCCAAGGCCACACTCCTGCGCCCGTTAACACAGATAAGACAGATCAACTGAATGA
CAACTGTGCCAGTGACGGTATGGATGCTATCTCGCAAATTAATGATCTTATGCTGAAATTGGCCGAGATGTTTAAAAAAT
TACGCAACGTATTACAGGACTACAACGTTAAGCAGCAACAACTTGGTTGGGACGTACAAATTGCCGCAATGGATGACAAA
CGTTCCGCTATTGATAAGGCCTGCGAAGCGAGCATCTGGACGGGGGTACTAGAGATCGCCGGAGGCGTCATAGGCATGGC
TGGGGTTGGGTTGTCGGGTAAATTTGGCGATGCAGCGACTCATATGAGTGGGGCGTTTAGTAAAGGGATTGAAGGCACAG
GTAAAGTAGTCGGTGCCAATATGAGCAAAGAGGCTGAGCTAGAACGCACTATAGGTGATTTTAAGGCGAGTAACGCTCAG
AGCTATATCAAGGGTGTTAATGATCTGAATGATAAAGCAAAACAAATTTCAGAGCAGATGCGATCCTTGATCAAAGATCT
CGTCGAATTGCACGGCCGCATTAGCGCGGCAGTGCATAACTAG

Upstream 100 bases:

>100_bases
AAAACAAGGCGACAGCTTAGACGGTGCCAGTAAGGCCATCAGTCAGAGTGGCGCACTACAAGCCCGTATCGCAGGTTCAA
CAGTATAAGTGAGGTTTACC

Downstream 100 bases:

>100_bases
CAGTGCTTCTATTTCATATCATTAAGTGTTAGGCCGCGCAGGTCTAACACTAAGGAGATCAATATGGATAGTGTAAGTCA
ATATCTTGCCCGTAAAGGGG

Product: putative pathogenicity island effector protein

Products: NA

Alternate protein names: Secretion system effector D [H]

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MTDINIISGQGHTPAPVNTDKTDQLNDNCASDGMDAISQINDLMLKLAEMFKKLRNVLQDYNVKQQQLGWDVQIAAMDDK
RSAIDKACEASIWTGVLEIAGGVIGMAGVGLSGKFGDAATHMSGAFSKGIEGTGKVVGANMSKEAELERTIGDFKASNAQ
SYIKGVNDLNDKAKQISEQMRSLIKDLVELHGRISAAVHN

Sequences:

>Translated_200_residues
MTDINIISGQGHTPAPVNTDKTDQLNDNCASDGMDAISQINDLMLKLAEMFKKLRNVLQDYNVKQQQLGWDVQIAAMDDK
RSAIDKACEASIWTGVLEIAGGVIGMAGVGLSGKFGDAATHMSGAFSKGIEGTGKVVGANMSKEAELERTIGDFKASNAQ
SYIKGVNDLNDKAKQISEQMRSLIKDLVELHGRISAAVHN
>Mature_199_residues
TDINIISGQGHTPAPVNTDKTDQLNDNCASDGMDAISQINDLMLKLAEMFKKLRNVLQDYNVKQQQLGWDVQIAAMDDKR
SAIDKACEASIWTGVLEIAGGVIGMAGVGLSGKFGDAATHMSGAFSKGIEGTGKVVGANMSKEAELERTIGDFKASNAQS
YIKGVNDLNDKAKQISEQMRSLIKDLVELHGRISAAVHN

Specific function: Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. May act as a translocator that mediates translocation of SPI-2 TTSS effector proteins from intraphagosomal bacterial cells into the host cells [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted. Cell surface. Note=Secreted via type III secretion system 2 (SPI-2 TTSS). After secretion, localizes mainly on the surface of the bacterial cell [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21411; Mature: 21279

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDINIISGQGHTPAPVNTDKTDQLNDNCASDGMDAISQINDLMLKLAEMFKKLRNVLQD
CCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YNVKQQQLGWDVQIAAMDDKRSAIDKACEASIWTGVLEIAGGVIGMAGVGLSGKFGDAAT
CCCHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHH
HMSGAFSKGIEGTGKVVGANMSKEAELERTIGDFKASNAQSYIKGVNDLNDKAKQISEQM
HHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
RSLIKDLVELHGRISAAVHN
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDINIISGQGHTPAPVNTDKTDQLNDNCASDGMDAISQINDLMLKLAEMFKKLRNVLQD
CCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YNVKQQQLGWDVQIAAMDDKRSAIDKACEASIWTGVLEIAGGVIGMAGVGLSGKFGDAAT
CCCHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHH
HMSGAFSKGIEGTGKVVGANMSKEAELERTIGDFKASNAQSYIKGVNDLNDKAKQISEQM
HHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
RSLIKDLVELHGRISAAVHN
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9786193; 9786194; 11677609 [H]