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The map label for this gene is yddE [C]

Identifier: 126174103

GI number: 126174103

Start: 2177465

End: 2178250

Strand: Direct

Name: yddE [C]

Synonym: Sbal_1877

Alternate gene names: 126174103

Gene position: 2177465-2178250 (Clockwise)

Preceding gene: 126174102

Following gene: 126174104

Centisome position: 42.47

GC content: 52.29

Gene sequence:

>786_bases
ATGCGCATACCCATATTTCAAGTCGATGCTTTCACCAAGCGGCGTTTTGCTGGAAATCCTGCAGCGGTTATGCTGCTGGA
GCGTTTTCTGGATGATGCTGTGTTACAGCAAATGGCTGCTGAAAACAATTTAGCTGAAACCGCATTTCTGGTTCTCGACG
CTGGCGACTATTTGTTGCGTTGGTTTACGCCGACGACTGAGGTTCCACTATGCGGCCATGCCACATTGGCGAGTGCGGCA
GTTGTCATGGAGCGGTTGCAGCCAAGTCGTACTAAAGTGGTGTTCCACTCCATCAGCGGTCCACTCTCGGTCACTCGAAC
GGAAGCCAGTTACATCATGGATTTCCCTGCTCGGTACCCTGAACGGGTGGACACGCCAATTGGGATGGCCGATGTACTGG
GTGCTATTCCCATAGAGGTTGCCGCAGATGCTTTCAACTATTTAGTTTTGTTAGACAGCGCACAGGCAGTTCGTGAGCTC
AGCCCTGATATTGCCGCGATTGCTCGTATGGATCGCAGCGGGCTGATTGTGACTGCGCCAGGTGACAATAGCTACGACTT
TGTGAGCCGCTATTTTGCACCAGCCAAAGGTATTCCTGAAGATCCTGTGACCGGTGGTGCACACTGCGGGTTGGCACCAT
ATTGGGCTAAGCGACTGAACAAAAAGTCGTTTAGGGCATATCAAGCCTCAAAGCGGGGTGGCGAGATACAGTGCCGACTG
GTTGGGGATCGTGTCGAGCTGGAAGGCGCCTGTGTTTTCTATTTGGAAGGTGAGGTGTTGATTTGA

Upstream 100 bases:

>100_bases
CACCTTGGACTTGTTGCTTGGTTCAACGTAGTTTGACTTGTTAGCAGGTCATTCCCTTTAATTGGGCAACCTGAGCATTC
AAGGCTAGATGAGATAACCT

Downstream 100 bases:

>100_bases
AAAGCTTTAATGGTTCTTGTCATTGTGGGGCGGTGCGTTTTGAGATTATGTCGGACTTTCCAGAACTGACAACCTGCGAT
TGTTCTATTTGTCGACGTAA

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MRIPIFQVDAFTKRRFAGNPAAVMLLERFLDDAVLQQMAAENNLAETAFLVLDAGDYLLRWFTPTTEVPLCGHATLASAA
VVMERLQPSRTKVVFHSISGPLSVTRTEASYIMDFPARYPERVDTPIGMADVLGAIPIEVAADAFNYLVLLDSAQAVREL
SPDIAAIARMDRSGLIVTAPGDNSYDFVSRYFAPAKGIPEDPVTGGAHCGLAPYWAKRLNKKSFRAYQASKRGGEIQCRL
VGDRVELEGACVFYLEGEVLI

Sequences:

>Translated_261_residues
MRIPIFQVDAFTKRRFAGNPAAVMLLERFLDDAVLQQMAAENNLAETAFLVLDAGDYLLRWFTPTTEVPLCGHATLASAA
VVMERLQPSRTKVVFHSISGPLSVTRTEASYIMDFPARYPERVDTPIGMADVLGAIPIEVAADAFNYLVLLDSAQAVREL
SPDIAAIARMDRSGLIVTAPGDNSYDFVSRYFAPAKGIPEDPVTGGAHCGLAPYWAKRLNKKSFRAYQASKRGGEIQCRL
VGDRVELEGACVFYLEGEVLI
>Mature_261_residues
MRIPIFQVDAFTKRRFAGNPAAVMLLERFLDDAVLQQMAAENNLAETAFLVLDAGDYLLRWFTPTTEVPLCGHATLASAA
VVMERLQPSRTKVVFHSISGPLSVTRTEASYIMDFPARYPERVDTPIGMADVLGAIPIEVAADAFNYLVLLDSAQAVREL
SPDIAAIARMDRSGLIVTAPGDNSYDFVSRYFAPAKGIPEDPVTGGAHCGLAPYWAKRLNKKSFRAYQASKRGGEIQCRL
VGDRVELEGACVFYLEGEVLI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=290, Percent_Identity=39.3103448275862, Blast_Score=182, Evalue=3e-46,
Organism=Homo sapiens, GI74316009, Length=259, Percent_Identity=38.6100386100386, Blast_Score=159, Evalue=3e-39,
Organism=Escherichia coli, GI1787737, Length=299, Percent_Identity=29.7658862876254, Blast_Score=97, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17542160, Length=315, Percent_Identity=34.2857142857143, Blast_Score=153, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI17542154, Length=315, Percent_Identity=34.2857142857143, Blast_Score=153, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI17542158, Length=310, Percent_Identity=32.9032258064516, Blast_Score=143, Evalue=8e-35,
Organism=Caenorhabditis elegans, GI17542152, Length=310, Percent_Identity=32.9032258064516, Blast_Score=143, Evalue=8e-35,
Organism=Saccharomyces cerevisiae, GI6321818, Length=238, Percent_Identity=30.672268907563, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 28577; Mature: 28577

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIPIFQVDAFTKRRFAGNPAAVMLLERFLDDAVLQQMAAENNLAETAFLVLDAGDYLLR
CCCCEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEE
WFTPTTEVPLCGHATLASAAVVMERLQPSRTKVVFHSISGPLSVTRTEASYIMDFPARYP
EECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCHHHEEECCCCCC
ERVDTPIGMADVLGAIPIEVAADAFNYLVLLDSAQAVRELSPDIAAIARMDRSGLIVTAP
HHCCCCCCHHHHHHCCCHHHHHHHHEEEEEECCHHHHHHCCCHHHHHHHCCCCCEEEECC
GDNSYDFVSRYFAPAKGIPEDPVTGGAHCGLAPYWAKRLNKKSFRAYQASKRGGEIQCRL
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCEEEEEE
VGDRVELEGACVFYLEGEVLI
ECCEEEECCEEEEEECCCEEC
>Mature Secondary Structure
MRIPIFQVDAFTKRRFAGNPAAVMLLERFLDDAVLQQMAAENNLAETAFLVLDAGDYLLR
CCCCEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEE
WFTPTTEVPLCGHATLASAAVVMERLQPSRTKVVFHSISGPLSVTRTEASYIMDFPARYP
EECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCHHHEEECCCCCC
ERVDTPIGMADVLGAIPIEVAADAFNYLVLLDSAQAVRELSPDIAAIARMDRSGLIVTAP
HHCCCCCCHHHHHHCCCHHHHHHHHEEEEEECCHHHHHHCCCHHHHHHHCCCCCEEEECC
GDNSYDFVSRYFAPAKGIPEDPVTGGAHCGLAPYWAKRLNKKSFRAYQASKRGGEIQCRL
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCEEEEEE
VGDRVELEGACVFYLEGEVLI
ECCEEEECCEEEEEECCCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]