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The map label for this gene is ybdM [H]

Identifier: 125624231

GI number: 125624231

Start: 1386995

End: 1387522

Strand: Reverse

Name: ybdM [H]

Synonym: llmg_1419

Alternate gene names: 125624231

Gene position: 1387522-1386995 (Counterclockwise)

Preceding gene: 125624232

Following gene: 125624230

Centisome position: 54.85

GC content: 38.07

Gene sequence:

>528_bases
ATGGGAGAGCTTTTTATAAGCCCAGCTTATCAAGTGCAACGTGTTCCAATTGAGAAAATCAGAGCCAACTCATATAATCC
AAACAAGACTGCACCATCAGAGTTCAAACTATTAGAGCGCTCTATCTTAGAAGATGGCTATACGATGCCAATCGTTTGTT
ATTATGATAAAGAAAAAGATATCTATGAGATAGTGGATGGTTTTCATCGATATCTAGTCATGAAAAATTCGCCAGAAATT
GCTCAAAGAGAACAAAATTGCTTACCAGTGTCAATCATTGACCGTCCCTTAGAAGACAGAATTGCGAGTACCATTCGCCA
CAATCGTGCTAGAGGGACTCATTCTATTGAATTAATGACGCAAATCGTTCAACAATTGGTTGAGGCAGGATTGAGTGACC
GTTGGATAATCACAAATATTGGGATGGATAAAGAAGAATTACTAAGATTAAAGCAATTGAGTGGTTTGGCCTCTTTGTTT
AAAGGAGGAGATTTTTCAAGATCTTGGGAATGGGATAGCGAAGAATGA

Upstream 100 bases:

>100_bases
GAATGTGTATCACAATTTTAAAAAATGATACTTCTTGCCAGTACATGGGTTTTGGTCAAACCAAAGATGAATTGCAAAAG
AAAAAGGAGGCCATGAAAAA

Downstream 100 bases:

>100_bases
TTAAATAGAGGAGCGAAAGCTACCCTATTTTTTATTTCTGAAAAAATAGAAAAAATATTTCTGTTTTAAAAAAGAAGTAG
CTTTTCTCAGGTGTGATATA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MGELFISPAYQVQRVPIEKIRANSYNPNKTAPSEFKLLERSILEDGYTMPIVCYYDKEKDIYEIVDGFHRYLVMKNSPEI
AQREQNCLPVSIIDRPLEDRIASTIRHNRARGTHSIELMTQIVQQLVEAGLSDRWIITNIGMDKEELLRLKQLSGLASLF
KGGDFSRSWEWDSEE

Sequences:

>Translated_175_residues
MGELFISPAYQVQRVPIEKIRANSYNPNKTAPSEFKLLERSILEDGYTMPIVCYYDKEKDIYEIVDGFHRYLVMKNSPEI
AQREQNCLPVSIIDRPLEDRIASTIRHNRARGTHSIELMTQIVQQLVEAGLSDRWIITNIGMDKEELLRLKQLSGLASLF
KGGDFSRSWEWDSEE
>Mature_174_residues
GELFISPAYQVQRVPIEKIRANSYNPNKTAPSEFKLLERSILEDGYTMPIVCYYDKEKDIYEIVDGFHRYLVMKNSPEIA
QREQNCLPVSIIDRPLEDRIASTIRHNRARGTHSIELMTQIVQQLVEAGLSDRWIITNIGMDKEELLRLKQLSGLASLFK
GGDFSRSWEWDSEE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=147, Percent_Identity=48.2993197278912, Blast_Score=141, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 20294; Mature: 20163

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGELFISPAYQVQRVPIEKIRANSYNPNKTAPSEFKLLERSILEDGYTMPIVCYYDKEKD
CCCEECCCCHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC
IYEIVDGFHRYLVMKNSPEIAQREQNCLPVSIIDRPLEDRIASTIRHNRARGTHSIELMT
HHHHHHHHHHEEEECCCCHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH
QIVQQLVEAGLSDRWIITNIGMDKEELLRLKQLSGLASLFKGGDFSRSWEWDSEE
HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GELFISPAYQVQRVPIEKIRANSYNPNKTAPSEFKLLERSILEDGYTMPIVCYYDKEKD
CCEECCCCHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC
IYEIVDGFHRYLVMKNSPEIAQREQNCLPVSIIDRPLEDRIASTIRHNRARGTHSIELMT
HHHHHHHHHHEEEECCCCHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH
QIVQQLVEAGLSDRWIITNIGMDKEELLRLKQLSGLASLFKGGDFSRSWEWDSEE
HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]