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The map label for this gene is ybdN [H]

Identifier: 125624232

GI number: 125624232

Start: 1387504

End: 1388823

Strand: Reverse

Name: ybdN [H]

Synonym: llmg_1420

Alternate gene names: 125624232

Gene position: 1388823-1387504 (Counterclockwise)

Preceding gene: 125624233

Following gene: 125624231

Centisome position: 54.91

GC content: 36.36

Gene sequence:

>1320_bases
GTGAGAAAATATCAAGAGGAAAATGTATATGAGGCTTTTAATAAGCGATTAGACTACATATGCAATTATTTTGATCATTT
AATCGTTTCCTTTTCGGGAGGAAAGGACTCCGGAGTGATGTTAGAACTCGTTCATCGTTACTACGAAGAAAACGAATTAG
AGGCACAAGGAGTTAAAGTTTCTGTTTATTATCTTGATTACGAAGGAAATTATCAAGAAACAAAAGACTATATTAAGCGT
TCAATGGGAAAATATCCTAGTTTTGACTATTATCACATCTGTATGCCTGTTTCAGCTTCTTGTGGCATATCAATGTCTCA
ATCAACTTGGTTGCCTTGGGATCCGGAACATCCAGAACTCTGGTTAAATCCCATTCCCAAAGGAGCAATTCATCTTCAAA
ATCATAATTTCCCATTTTTTCAAGTTGGAATGTCAGACTATGATTTTCAAAGTAAGTATTGCCAGTGGCTTCATCAAGAA
ACAAAAGCAGAAAGAACGGCTGTTCTTGTTGGAATTAGAGCTCAGGAAAGTTTGAATCGTTTTAATGCTGTGACTCGTGA
GGAAACTTTTTCACGATTTGGCATGACCAATTATAGTCATCGTATTTTTCATAATGTCTTCAATTTTTATCCAATGTATG
ATTGGCTATTTGAGGATGTATGGGTAGCAAATGCAAAATTTGGCTTTGACTATAATCATTTATATGATTTATATTTTCAA
GCTGGTGTTCCCTTTAAAAGTATGAGAGTTGCTAATCCATTTCATCAGTGTGGAGTCGCCTCTCTAAAACTCTATCAAGC
TTTAGAGCCTGAGACTTGGGGGAAACTAATGGGGCGTGTCAATGGAGCAAATTTTGCGGCTCTTTATGGAGGGACGGTCG
CTCTTGGTTATCGGGGAGTCACCCTGCCTAAAGGACACACTTGGGAAAGCTATGTCAATTTCCTTCTTAAAACTCTTTCG
AAAGAAATGCGGCAAGTTTATCTTAAAAAATTTCAAAGTTCATTGACTTATTGCACCAAAAACGGTGGGGCCCTTCCAGA
AAAAGTAGTTCGTGAACTTGAAGATACAGACTTACAATTTGAAAACCTGGGAAATCCGAAAAATAATCGAAATTATAAAC
AGGAACATAAGGTTATACGTTTCAAAAAATACCCCGATGATGTTCCAATCAAAAACTTTAGGCTGGTTCCTTCTTATAAG
AGAATGTGTATCACAATTTTAAAAAATGATACTTCTTGCCAGTACATGGGTTTTGGTCAAACCAAAGATGAATTGCAAAA
GAAAAAGGAGGCCATGAAAAAATGGGAGAGCTTTTTATAA

Upstream 100 bases:

>100_bases
ATAGACTTAGTTGATAAGGAATTTTAGATAAATTATAAGAATTCAATATTAAATCGGGAAAATATTATCTAAATGGAAAC
TATTCAAAGGGGATGAACTA

Downstream 100 bases:

>100_bases
GCCCAGCTTATCAAGTGCAACGTGTTCCAATTGAGAAAATCAGAGCCAACTCATATAATCCAAACAAGACTGCACCATCA
GAGTTCAAACTATTAGAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MRKYQEENVYEAFNKRLDYICNYFDHLIVSFSGGKDSGVMLELVHRYYEENELEAQGVKVSVYYLDYEGNYQETKDYIKR
SMGKYPSFDYYHICMPVSASCGISMSQSTWLPWDPEHPELWLNPIPKGAIHLQNHNFPFFQVGMSDYDFQSKYCQWLHQE
TKAERTAVLVGIRAQESLNRFNAVTREETFSRFGMTNYSHRIFHNVFNFYPMYDWLFEDVWVANAKFGFDYNHLYDLYFQ
AGVPFKSMRVANPFHQCGVASLKLYQALEPETWGKLMGRVNGANFAALYGGTVALGYRGVTLPKGHTWESYVNFLLKTLS
KEMRQVYLKKFQSSLTYCTKNGGALPEKVVRELEDTDLQFENLGNPKNNRNYKQEHKVIRFKKYPDDVPIKNFRLVPSYK
RMCITILKNDTSCQYMGFGQTKDELQKKKEAMKKWESFL

Sequences:

>Translated_439_residues
MRKYQEENVYEAFNKRLDYICNYFDHLIVSFSGGKDSGVMLELVHRYYEENELEAQGVKVSVYYLDYEGNYQETKDYIKR
SMGKYPSFDYYHICMPVSASCGISMSQSTWLPWDPEHPELWLNPIPKGAIHLQNHNFPFFQVGMSDYDFQSKYCQWLHQE
TKAERTAVLVGIRAQESLNRFNAVTREETFSRFGMTNYSHRIFHNVFNFYPMYDWLFEDVWVANAKFGFDYNHLYDLYFQ
AGVPFKSMRVANPFHQCGVASLKLYQALEPETWGKLMGRVNGANFAALYGGTVALGYRGVTLPKGHTWESYVNFLLKTLS
KEMRQVYLKKFQSSLTYCTKNGGALPEKVVRELEDTDLQFENLGNPKNNRNYKQEHKVIRFKKYPDDVPIKNFRLVPSYK
RMCITILKNDTSCQYMGFGQTKDELQKKKEAMKKWESFL
>Mature_439_residues
MRKYQEENVYEAFNKRLDYICNYFDHLIVSFSGGKDSGVMLELVHRYYEENELEAQGVKVSVYYLDYEGNYQETKDYIKR
SMGKYPSFDYYHICMPVSASCGISMSQSTWLPWDPEHPELWLNPIPKGAIHLQNHNFPFFQVGMSDYDFQSKYCQWLHQE
TKAERTAVLVGIRAQESLNRFNAVTREETFSRFGMTNYSHRIFHNVFNFYPMYDWLFEDVWVANAKFGFDYNHLYDLYFQ
AGVPFKSMRVANPFHQCGVASLKLYQALEPETWGKLMGRVNGANFAALYGGTVALGYRGVTLPKGHTWESYVNFLLKTLS
KEMRQVYLKKFQSSLTYCTKNGGALPEKVVRELEDTDLQFENLGNPKNNRNYKQEHKVIRFKKYPDDVPIKNFRLVPSYK
RMCITILKNDTSCQYMGFGQTKDELQKKKEAMKKWESFL

Specific function: Unknown

COG id: COG3969

COG function: function code R; Predicted phosphoadenosine phosphosulfate sulfotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786818, Length=434, Percent_Identity=28.110599078341, Blast_Score=175, Evalue=4e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021845
- InterPro:   IPR002500
- InterPro:   IPR014729 [H]

Pfam domain/function: PF11922 DUF3440; PF01507 PAPS_reduct [H]

EC number: NA

Molecular weight: Translated: 51666; Mature: 51666

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKYQEENVYEAFNKRLDYICNYFDHLIVSFSGGKDSGVMLELVHRYYEENELEAQGVKV
CCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEE
SVYYLDYEGNYQETKDYIKRSMGKYPSFDYYHICMPVSASCGISMSQSTWLPWDPEHPEL
EEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCE
WLNPIPKGAIHLQNHNFPFFQVGMSDYDFQSKYCQWLHQETKAERTAVLVGIRAQESLNR
ECCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHH
FNAVTREETFSRFGMTNYSHRIFHNVFNFYPMYDWLFEDVWVANAKFGFDYNHLYDLYFQ
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHH
AGVPFKSMRVANPFHQCGVASLKLYQALEPETWGKLMGRVNGANFAALYGGTVALGYRGV
CCCCHHHHHHCCHHHHHCHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCEEEECCCCE
TLPKGHTWESYVNFLLKTLSKEMRQVYLKKFQSSLTYCTKNGGALPEKVVRELEDTDLQF
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCH
ENLGNPKNNRNYKQEHKVIRFKKYPDDVPIKNFRLVPSYKRMCITILKNDTSCQYMGFGQ
HHCCCCCCCCCHHHHHHEEEEECCCCCCCCCCEEECCCHHHHEEEEEECCCCEEEEECCC
TKDELQKKKEAMKKWESFL
CHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRKYQEENVYEAFNKRLDYICNYFDHLIVSFSGGKDSGVMLELVHRYYEENELEAQGVKV
CCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEE
SVYYLDYEGNYQETKDYIKRSMGKYPSFDYYHICMPVSASCGISMSQSTWLPWDPEHPEL
EEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCE
WLNPIPKGAIHLQNHNFPFFQVGMSDYDFQSKYCQWLHQETKAERTAVLVGIRAQESLNR
ECCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHH
FNAVTREETFSRFGMTNYSHRIFHNVFNFYPMYDWLFEDVWVANAKFGFDYNHLYDLYFQ
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHH
AGVPFKSMRVANPFHQCGVASLKLYQALEPETWGKLMGRVNGANFAALYGGTVALGYRGV
CCCCHHHHHHCCHHHHHCHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCEEEECCCCE
TLPKGHTWESYVNFLLKTLSKEMRQVYLKKFQSSLTYCTKNGGALPEKVVRELEDTDLQF
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCH
ENLGNPKNNRNYKQEHKVIRFKKYPDDVPIKNFRLVPSYKRMCITILKNDTSCQYMGFGQ
HHCCCCCCCCCHHHHHHEEEEECCCCCCCCCCEEECCCHHHHEEEEEECCCCEEEEECCC
TKDELQKKKEAMKKWESFL
CHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]