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The map label for this gene is araQ [H]

Identifier: 125623995

GI number: 125623995

Start: 1131120

End: 1131974

Strand: Direct

Name: araQ [H]

Synonym: llmg_1165

Alternate gene names: 125623995

Gene position: 1131120-1131974 (Clockwise)

Preceding gene: 125623994

Following gene: 125623996

Centisome position: 44.72

GC content: 38.83

Gene sequence:

>855_bases
ATGAATAAAAGCTATGCAGGTTCACTAAGAGCCAGACGTACTTTGATTTATATCTGTTTTGGTATTTTGACACTTTTGAG
TCTCTTGCCTTTTGCAATCATGCTGGCAGATTCAACACGTTCGGTAGTTCAGCTTAATACCGGAGTTTCTCTCTTGCCGG
GGAGTTCGCTAGGACATAATATTAAAGTTTTGTTAAGTTATGATTTTAACTTAGGACATGGAATGTTTAACTCGGCGTTT
ATCGCTGTGGTTTCAACGGCTTTGTCCGTTTATTGTTCGGCACTGGCTGCTTATGCTCTAGTCGCTTATGATTTTAAAGC
AAAACGCTTGGTTTATGCTTTTGTAATTGCTTTGATTATGATTCCTGGTCAAGTTTCAATGGTCGGTTTCTATCAATTTA
TGATTCAGCTTAATCTTTTGGATAATTATATTCCCTTGATTTTACCAGGAATGTGTGCGCCTGCTTCGATATTTTTCTTA
GTAGAGTATATGGGAACAGTCTACAATAAGGATTATGCAGATTCGGCTCGACTTGATGGGGCGAGTGAGCTTAAGATTTT
TCATTCTGTAATGTTGCCAATGATGAAACCGGGTCTAGCAACAATGGCAATTTTTGGTTTTGTCTTTAGTTGGAATAACT
TTTTAATGCCTTTGATGCTGATTTCTGACAAAAATCTCTATACCTTACCAATGATGGTACAAACAATGACAGCTTTAGGG
GCTGGAGGTCATACGGTTGAATGGGGAGCAGTGTACTCTGGTCTTTCGATTACGATTGCACCCATTATTATTGTTTATCT
GATTCTCTCTCGTTTTATTGTCGGTGGAGGAACAGCAGGAGGCGTCAAAGGTTAA

Upstream 100 bases:

>100_bases
CAGTGATTCTGTTGATTATCGTGGCGATTGTTTCTATTGCTCTTTTCCGTTTCTTCCGTGAACGGACGAGCAATAAGGAT
TTGGTAGGAGGTAAAGATTG

Downstream 100 bases:

>100_bases
GATGAAAAACTTATTATTAAAAGTCGCTTCAAAAGAAGCCATTGACAAGAAAGTAGAGAAAGTCTTTGAAATTCTCTTTG
GACAAGATTCTCCTGAACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MNKSYAGSLRARRTLIYICFGILTLLSLLPFAIMLADSTRSVVQLNTGVSLLPGSSLGHNIKVLLSYDFNLGHGMFNSAF
IAVVSTALSVYCSALAAYALVAYDFKAKRLVYAFVIALIMIPGQVSMVGFYQFMIQLNLLDNYIPLILPGMCAPASIFFL
VEYMGTVYNKDYADSARLDGASELKIFHSVMLPMMKPGLATMAIFGFVFSWNNFLMPLMLISDKNLYTLPMMVQTMTALG
AGGHTVEWGAVYSGLSITIAPIIIVYLILSRFIVGGGTAGGVKG

Sequences:

>Translated_284_residues
MNKSYAGSLRARRTLIYICFGILTLLSLLPFAIMLADSTRSVVQLNTGVSLLPGSSLGHNIKVLLSYDFNLGHGMFNSAF
IAVVSTALSVYCSALAAYALVAYDFKAKRLVYAFVIALIMIPGQVSMVGFYQFMIQLNLLDNYIPLILPGMCAPASIFFL
VEYMGTVYNKDYADSARLDGASELKIFHSVMLPMMKPGLATMAIFGFVFSWNNFLMPLMLISDKNLYTLPMMVQTMTALG
AGGHTVEWGAVYSGLSITIAPIIIVYLILSRFIVGGGTAGGVKG
>Mature_284_residues
MNKSYAGSLRARRTLIYICFGILTLLSLLPFAIMLADSTRSVVQLNTGVSLLPGSSLGHNIKVLLSYDFNLGHGMFNSAF
IAVVSTALSVYCSALAAYALVAYDFKAKRLVYAFVIALIMIPGQVSMVGFYQFMIQLNLLDNYIPLILPGMCAPASIFFL
VEYMGTVYNKDYADSARLDGASELKIFHSVMLPMMKPGLATMAIFGFVFSWNNFLMPLMLISDKNLYTLPMMVQTMTALG
AGGHTVEWGAVYSGLSITIAPIIIVYLILSRFIVGGGTAGGVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=232, Percent_Identity=28.448275862069, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787571, Length=281, Percent_Identity=27.7580071174377, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1790464, Length=223, Percent_Identity=28.2511210762332, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30807; Mature: 30807

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSYAGSLRARRTLIYICFGILTLLSLLPFAIMLADSTRSVVQLNTGVSLLPGSSLGHN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCCCC
IKVLLSYDFNLGHGMFNSAFIAVVSTALSVYCSALAAYALVAYDFKAKRLVYAFVIALIM
EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPGQVSMVGFYQFMIQLNLLDNYIPLILPGMCAPASIFFLVEYMGTVYNKDYADSARLDG
CCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCC
ASELKIFHSVMLPMMKPGLATMAIFGFVFSWNNFLMPLMLISDKNLYTLPMMVQTMTALG
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHC
AGGHTVEWGAVYSGLSITIAPIIIVYLILSRFIVGGGTAGGVKG
CCCCEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNKSYAGSLRARRTLIYICFGILTLLSLLPFAIMLADSTRSVVQLNTGVSLLPGSSLGHN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCCCC
IKVLLSYDFNLGHGMFNSAFIAVVSTALSVYCSALAAYALVAYDFKAKRLVYAFVIALIM
EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPGQVSMVGFYQFMIQLNLLDNYIPLILPGMCAPASIFFLVEYMGTVYNKDYADSARLDG
CCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCC
ASELKIFHSVMLPMMKPGLATMAIFGFVFSWNNFLMPLMLISDKNLYTLPMMVQTMTALG
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHC
AGGHTVEWGAVYSGLSITIAPIIIVYLILSRFIVGGGTAGGVKG
CCCCEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]