Definition Methanocorpusculum labreanum Z chromosome, complete genome.
Accession NC_008942
Length 1,804,962

Click here to switch to the map view.

The map label for this gene is 124486496

Identifier: 124486496

GI number: 124486496

Start: 1719310

End: 1721130

Strand: Reverse

Name: 124486496

Synonym: Mlab_1684

Alternate gene names: NA

Gene position: 1721130-1719310 (Counterclockwise)

Preceding gene: 124486498

Following gene: 124486491

Centisome position: 95.36

GC content: 58.87

Gene sequence:

>1821_bases
ATGGCCTTGAACCAGCCAAACCCTCCGCTTCCGGCGGGCTACACCGCCGAACTCACTGAAACGATCACTGAACCCCTTTC
GCCGAAAGAAGCCAAAATCGGTCTCGACGTCCAATCCTACCGGTTCAAGCTCTATAAATTCGGCCAGCTCGTCGACATCC
TTACGACCTTTGACACCGGCCCCGACCTTCGGCGCGCTGTCAGGGAACACATCATCGACACCGAACCGGAAGGCCCCGAA
AAAGAGTTCCTTCTCCGGTTCTTCGACCCGGCATCCACCCCGCCCTGGGAGCGAAAAACCATGATCCGCGGGCAGCTCCC
CACGCCCGACGCTCTCCTCAACTCCCTCAACGACGAAGGAAACGCCGTCCGTTTCGAAAAAGAAGCCGGCGGCAACCTCG
TCTACGACATCGCGAGCGGCCAGTGGTTTGCCTTTATCACCAACCACTGGGAACCCGCCAGAGAAAAACTCGGGAAGGTC
CTTCGGCTGGTCGGGAAAAGCCTCGAACAGGAACTCGACTACTGGAAGCGCCGGGCCGCCGCCGAAAACACCCCCGAGAT
GCGAAACCTCGTTGTCCAGCTCCAGAATCATGTGAATCTGAGCAAAAACCACACCAAACAGGTCGCCCTCAGAAAAATGA
TCGAAGGCTCGTCCATGCAGGTGAATCTTTCCGAGGCGTCCGACGGCCGGTATATCACCTGCAAAAACGGCGCTCTCGAC
TGCAGGACGGGCGAGTTCATCCCGATCTGGGCGTGCGATTCGATCCGGGAGAAGTACCCGCTGATCTATCTGGACGCCGT
CTACACGCCGGGGCTTCGCTCGCCGGCGTTCATCGACCACCTCAAAAAGGTGTTCGATGACAATGTGAGCGGTCTTTCTG
AGGAGGAGCGGACGCTCCAGATGATGGAACTCGGCAGGTGTTTTCTGCGTCTGCTGGGTTATCTGCTGTTTCCGGGCAAT
CCGGAGCAGGTGATTATTTTTCTGTGGGGGAAGGGGAGTAACGGGAAGTCGACGACGATCGACGTGCTGCGGGAGATTTT
CGGGTCGGAGATGTCGGAGGCTTCGGTCCGTGAGCTGTATGCGGGGTCCGAGGATCGTCCGGCGTCGGGGGTTGCCCGGT
CGCTTTCAAAGCGGGTGATGCTGATTTCGGAGGCGAGCGATGAGGAGTCGCGGGGCGGCCGGATCAGCGCGGATACGGTG
AAAGCTTTGACGGGGGACGCGGTGACAAGCCGGTTTCGGGATATGTATGAGAAGTCCCGCCCGCAGCGGGTGGTGTGCAC
GCCGGTGGGGGTGACGAATGAGCTGCCCCGGTTCGATAAGACGCTGGATTACGCTCTTCTGCGCCGGATTTTTACGATCC
CGTTCCCGCATTTGTTTGCGGGGGATGAGCGGGCGCGTGATATCCGGGAGTGTTTGCTTGCGGAGCGGGATGCGGTCTTT
TCGATGGTGGCGGATGAGCTGATCGCGTATACGAAGGAGGGGCTTTTGCCGCAGCCGGCGTTTTGCGCATCCACGCAGAA
TGAGCTGCTGGCGGGGTTTGAGGTGTCGGCGTTTATCGAGGAGTGTGTGGAAAAATCTGAGACGGGGCGTGTGTCCCGTC
TGGAGCTGGAGGAGGCGTATATTTCGTGGTGTGCCCGCCATGATATTCCGGTGGGGCTTGCTAAGATCCAGATGCCGGGG
TATGATGAGTATTCGCAGGTGAATTTCCGGCAGGGTCTGTCGGAGAAGGAGAAGAGGGGGCTGTTTAAGGGGATGCGGGT
GTATGGGTTTGAGGAACAGCGGACGAACAGTCAGCGGTATTTCAAGTGCCGGCTGAAATAG

Upstream 100 bases:

>100_bases
CCTATTCGATGTATATCTATAAATACTCTGCTATCTAATTACATTTGTAACTCATGATATCAAAGATATATCAACCCCTA
AAAAACAACGGAGGGAGCGA

Downstream 100 bases:

>100_bases
AGGTGAGTTTTGTGTCACGTTGCTTTTTGAAAAACGTGACACTTCTTTTTTGGAGGGAATTTGGTGTCAGGTTTTGAAAA
ATGATGGTGACACTAAAATC

Product: hypothetical protein

Products: NA

Alternate protein names: Phage/Plasmid Primase P4 Family; Phage Primase; Phage/Plasmid Primase P4-Like; Phage Associated DNA Primase; DNA-Polymerase Or DNA-Primase; Bacteriophage Related Protein; DNA Primase; Phage-Like Protein; Bacteriophage Protein; Nucleoside Triphosphatase D5 Family

Number of amino acids: Translated: 606; Mature: 605

Protein sequence:

>606_residues
MALNQPNPPLPAGYTAELTETITEPLSPKEAKIGLDVQSYRFKLYKFGQLVDILTTFDTGPDLRRAVREHIIDTEPEGPE
KEFLLRFFDPASTPPWERKTMIRGQLPTPDALLNSLNDEGNAVRFEKEAGGNLVYDIASGQWFAFITNHWEPAREKLGKV
LRLVGKSLEQELDYWKRRAAAENTPEMRNLVVQLQNHVNLSKNHTKQVALRKMIEGSSMQVNLSEASDGRYITCKNGALD
CRTGEFIPIWACDSIREKYPLIYLDAVYTPGLRSPAFIDHLKKVFDDNVSGLSEEERTLQMMELGRCFLRLLGYLLFPGN
PEQVIIFLWGKGSNGKSTTIDVLREIFGSEMSEASVRELYAGSEDRPASGVARSLSKRVMLISEASDEESRGGRISADTV
KALTGDAVTSRFRDMYEKSRPQRVVCTPVGVTNELPRFDKTLDYALLRRIFTIPFPHLFAGDERARDIRECLLAERDAVF
SMVADELIAYTKEGLLPQPAFCASTQNELLAGFEVSAFIEECVEKSETGRVSRLELEEAYISWCARHDIPVGLAKIQMPG
YDEYSQVNFRQGLSEKEKRGLFKGMRVYGFEEQRTNSQRYFKCRLK

Sequences:

>Translated_606_residues
MALNQPNPPLPAGYTAELTETITEPLSPKEAKIGLDVQSYRFKLYKFGQLVDILTTFDTGPDLRRAVREHIIDTEPEGPE
KEFLLRFFDPASTPPWERKTMIRGQLPTPDALLNSLNDEGNAVRFEKEAGGNLVYDIASGQWFAFITNHWEPAREKLGKV
LRLVGKSLEQELDYWKRRAAAENTPEMRNLVVQLQNHVNLSKNHTKQVALRKMIEGSSMQVNLSEASDGRYITCKNGALD
CRTGEFIPIWACDSIREKYPLIYLDAVYTPGLRSPAFIDHLKKVFDDNVSGLSEEERTLQMMELGRCFLRLLGYLLFPGN
PEQVIIFLWGKGSNGKSTTIDVLREIFGSEMSEASVRELYAGSEDRPASGVARSLSKRVMLISEASDEESRGGRISADTV
KALTGDAVTSRFRDMYEKSRPQRVVCTPVGVTNELPRFDKTLDYALLRRIFTIPFPHLFAGDERARDIRECLLAERDAVF
SMVADELIAYTKEGLLPQPAFCASTQNELLAGFEVSAFIEECVEKSETGRVSRLELEEAYISWCARHDIPVGLAKIQMPG
YDEYSQVNFRQGLSEKEKRGLFKGMRVYGFEEQRTNSQRYFKCRLK
>Mature_605_residues
ALNQPNPPLPAGYTAELTETITEPLSPKEAKIGLDVQSYRFKLYKFGQLVDILTTFDTGPDLRRAVREHIIDTEPEGPEK
EFLLRFFDPASTPPWERKTMIRGQLPTPDALLNSLNDEGNAVRFEKEAGGNLVYDIASGQWFAFITNHWEPAREKLGKVL
RLVGKSLEQELDYWKRRAAAENTPEMRNLVVQLQNHVNLSKNHTKQVALRKMIEGSSMQVNLSEASDGRYITCKNGALDC
RTGEFIPIWACDSIREKYPLIYLDAVYTPGLRSPAFIDHLKKVFDDNVSGLSEEERTLQMMELGRCFLRLLGYLLFPGNP
EQVIIFLWGKGSNGKSTTIDVLREIFGSEMSEASVRELYAGSEDRPASGVARSLSKRVMLISEASDEESRGGRISADTVK
ALTGDAVTSRFRDMYEKSRPQRVVCTPVGVTNELPRFDKTLDYALLRRIFTIPFPHLFAGDERARDIRECLLAERDAVFS
MVADELIAYTKEGLLPQPAFCASTQNELLAGFEVSAFIEECVEKSETGRVSRLELEEAYISWCARHDIPVGLAKIQMPGY
DEYSQVNFRQGLSEKEKRGLFKGMRVYGFEEQRTNSQRYFKCRLK

Specific function: Unknown

COG id: COG3378

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 68687; Mature: 68556

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALNQPNPPLPAGYTAELTETITEPLSPKEAKIGLDVQSYRFKLYKFGQLVDILTTFDTG
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCC
PDLRRAVREHIIDTEPEGPEKEFLLRFFDPASTPPWERKTMIRGQLPTPDALLNSLNDEG
HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCC
NAVRFEKEAGGNLVYDIASGQWFAFITNHWEPAREKLGKVLRLVGKSLEQELDYWKRRAA
CEEEEECCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AENTPEMRNLVVQLQNHVNLSKNHTKQVALRKMIEGSSMQVNLSEASDGRYITCKNGALD
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCC
CRTGEFIPIWACDSIREKYPLIYLDAVYTPGLRSPAFIDHLKKVFDDNVSGLSEEERTLQ
CCCCCEEEEEECHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH
MMELGRCFLRLLGYLLFPGNPEQVIIFLWGKGSNGKSTTIDVLREIFGSEMSEASVRELY
HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
AGSEDRPASGVARSLSKRVMLISEASDEESRGGRISADTVKALTGDAVTSRFRDMYEKSR
CCCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PQRVVCTPVGVTNELPRFDKTLDYALLRRIFTIPFPHLFAGDERARDIRECLLAERDAVF
CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHH
SMVADELIAYTKEGLLPQPAFCASTQNELLAGFEVSAFIEECVEKSETGRVSRLELEEAY
HHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHCCHHHHHHHHHHHHHCCCCEEHHHHHHHH
ISWCARHDIPVGLAKIQMPGYDEYSQVNFRQGLSEKEKRGLFKGMRVYGFEEQRTNSQRY
HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCCCEE
FKCRLK
EEEECC
>Mature Secondary Structure 
ALNQPNPPLPAGYTAELTETITEPLSPKEAKIGLDVQSYRFKLYKFGQLVDILTTFDTG
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCC
PDLRRAVREHIIDTEPEGPEKEFLLRFFDPASTPPWERKTMIRGQLPTPDALLNSLNDEG
HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCC
NAVRFEKEAGGNLVYDIASGQWFAFITNHWEPAREKLGKVLRLVGKSLEQELDYWKRRAA
CEEEEECCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AENTPEMRNLVVQLQNHVNLSKNHTKQVALRKMIEGSSMQVNLSEASDGRYITCKNGALD
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCC
CRTGEFIPIWACDSIREKYPLIYLDAVYTPGLRSPAFIDHLKKVFDDNVSGLSEEERTLQ
CCCCCEEEEEECHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH
MMELGRCFLRLLGYLLFPGNPEQVIIFLWGKGSNGKSTTIDVLREIFGSEMSEASVRELY
HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
AGSEDRPASGVARSLSKRVMLISEASDEESRGGRISADTVKALTGDAVTSRFRDMYEKSR
CCCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PQRVVCTPVGVTNELPRFDKTLDYALLRRIFTIPFPHLFAGDERARDIRECLLAERDAVF
CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHH
SMVADELIAYTKEGLLPQPAFCASTQNELLAGFEVSAFIEECVEKSETGRVSRLELEEAY
HHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHCCHHHHHHHHHHHHHCCCCEEHHHHHHHH
ISWCARHDIPVGLAKIQMPGYDEYSQVNFRQGLSEKEKRGLFKGMRVYGFEEQRTNSQRY
HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCCCEE
FKCRLK
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA