| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124486496
Identifier: 124486496
GI number: 124486496
Start: 1719310
End: 1721130
Strand: Reverse
Name: 124486496
Synonym: Mlab_1684
Alternate gene names: NA
Gene position: 1721130-1719310 (Counterclockwise)
Preceding gene: 124486498
Following gene: 124486491
Centisome position: 95.36
GC content: 58.87
Gene sequence:
>1821_bases ATGGCCTTGAACCAGCCAAACCCTCCGCTTCCGGCGGGCTACACCGCCGAACTCACTGAAACGATCACTGAACCCCTTTC GCCGAAAGAAGCCAAAATCGGTCTCGACGTCCAATCCTACCGGTTCAAGCTCTATAAATTCGGCCAGCTCGTCGACATCC TTACGACCTTTGACACCGGCCCCGACCTTCGGCGCGCTGTCAGGGAACACATCATCGACACCGAACCGGAAGGCCCCGAA AAAGAGTTCCTTCTCCGGTTCTTCGACCCGGCATCCACCCCGCCCTGGGAGCGAAAAACCATGATCCGCGGGCAGCTCCC CACGCCCGACGCTCTCCTCAACTCCCTCAACGACGAAGGAAACGCCGTCCGTTTCGAAAAAGAAGCCGGCGGCAACCTCG TCTACGACATCGCGAGCGGCCAGTGGTTTGCCTTTATCACCAACCACTGGGAACCCGCCAGAGAAAAACTCGGGAAGGTC CTTCGGCTGGTCGGGAAAAGCCTCGAACAGGAACTCGACTACTGGAAGCGCCGGGCCGCCGCCGAAAACACCCCCGAGAT GCGAAACCTCGTTGTCCAGCTCCAGAATCATGTGAATCTGAGCAAAAACCACACCAAACAGGTCGCCCTCAGAAAAATGA TCGAAGGCTCGTCCATGCAGGTGAATCTTTCCGAGGCGTCCGACGGCCGGTATATCACCTGCAAAAACGGCGCTCTCGAC TGCAGGACGGGCGAGTTCATCCCGATCTGGGCGTGCGATTCGATCCGGGAGAAGTACCCGCTGATCTATCTGGACGCCGT CTACACGCCGGGGCTTCGCTCGCCGGCGTTCATCGACCACCTCAAAAAGGTGTTCGATGACAATGTGAGCGGTCTTTCTG AGGAGGAGCGGACGCTCCAGATGATGGAACTCGGCAGGTGTTTTCTGCGTCTGCTGGGTTATCTGCTGTTTCCGGGCAAT CCGGAGCAGGTGATTATTTTTCTGTGGGGGAAGGGGAGTAACGGGAAGTCGACGACGATCGACGTGCTGCGGGAGATTTT CGGGTCGGAGATGTCGGAGGCTTCGGTCCGTGAGCTGTATGCGGGGTCCGAGGATCGTCCGGCGTCGGGGGTTGCCCGGT CGCTTTCAAAGCGGGTGATGCTGATTTCGGAGGCGAGCGATGAGGAGTCGCGGGGCGGCCGGATCAGCGCGGATACGGTG AAAGCTTTGACGGGGGACGCGGTGACAAGCCGGTTTCGGGATATGTATGAGAAGTCCCGCCCGCAGCGGGTGGTGTGCAC GCCGGTGGGGGTGACGAATGAGCTGCCCCGGTTCGATAAGACGCTGGATTACGCTCTTCTGCGCCGGATTTTTACGATCC CGTTCCCGCATTTGTTTGCGGGGGATGAGCGGGCGCGTGATATCCGGGAGTGTTTGCTTGCGGAGCGGGATGCGGTCTTT TCGATGGTGGCGGATGAGCTGATCGCGTATACGAAGGAGGGGCTTTTGCCGCAGCCGGCGTTTTGCGCATCCACGCAGAA TGAGCTGCTGGCGGGGTTTGAGGTGTCGGCGTTTATCGAGGAGTGTGTGGAAAAATCTGAGACGGGGCGTGTGTCCCGTC TGGAGCTGGAGGAGGCGTATATTTCGTGGTGTGCCCGCCATGATATTCCGGTGGGGCTTGCTAAGATCCAGATGCCGGGG TATGATGAGTATTCGCAGGTGAATTTCCGGCAGGGTCTGTCGGAGAAGGAGAAGAGGGGGCTGTTTAAGGGGATGCGGGT GTATGGGTTTGAGGAACAGCGGACGAACAGTCAGCGGTATTTCAAGTGCCGGCTGAAATAG
Upstream 100 bases:
>100_bases CCTATTCGATGTATATCTATAAATACTCTGCTATCTAATTACATTTGTAACTCATGATATCAAAGATATATCAACCCCTA AAAAACAACGGAGGGAGCGA
Downstream 100 bases:
>100_bases AGGTGAGTTTTGTGTCACGTTGCTTTTTGAAAAACGTGACACTTCTTTTTTGGAGGGAATTTGGTGTCAGGTTTTGAAAA ATGATGGTGACACTAAAATC
Product: hypothetical protein
Products: NA
Alternate protein names: Phage/Plasmid Primase P4 Family; Phage Primase; Phage/Plasmid Primase P4-Like; Phage Associated DNA Primase; DNA-Polymerase Or DNA-Primase; Bacteriophage Related Protein; DNA Primase; Phage-Like Protein; Bacteriophage Protein; Nucleoside Triphosphatase D5 Family
Number of amino acids: Translated: 606; Mature: 605
Protein sequence:
>606_residues MALNQPNPPLPAGYTAELTETITEPLSPKEAKIGLDVQSYRFKLYKFGQLVDILTTFDTGPDLRRAVREHIIDTEPEGPE KEFLLRFFDPASTPPWERKTMIRGQLPTPDALLNSLNDEGNAVRFEKEAGGNLVYDIASGQWFAFITNHWEPAREKLGKV LRLVGKSLEQELDYWKRRAAAENTPEMRNLVVQLQNHVNLSKNHTKQVALRKMIEGSSMQVNLSEASDGRYITCKNGALD CRTGEFIPIWACDSIREKYPLIYLDAVYTPGLRSPAFIDHLKKVFDDNVSGLSEEERTLQMMELGRCFLRLLGYLLFPGN PEQVIIFLWGKGSNGKSTTIDVLREIFGSEMSEASVRELYAGSEDRPASGVARSLSKRVMLISEASDEESRGGRISADTV KALTGDAVTSRFRDMYEKSRPQRVVCTPVGVTNELPRFDKTLDYALLRRIFTIPFPHLFAGDERARDIRECLLAERDAVF SMVADELIAYTKEGLLPQPAFCASTQNELLAGFEVSAFIEECVEKSETGRVSRLELEEAYISWCARHDIPVGLAKIQMPG YDEYSQVNFRQGLSEKEKRGLFKGMRVYGFEEQRTNSQRYFKCRLK
Sequences:
>Translated_606_residues MALNQPNPPLPAGYTAELTETITEPLSPKEAKIGLDVQSYRFKLYKFGQLVDILTTFDTGPDLRRAVREHIIDTEPEGPE KEFLLRFFDPASTPPWERKTMIRGQLPTPDALLNSLNDEGNAVRFEKEAGGNLVYDIASGQWFAFITNHWEPAREKLGKV LRLVGKSLEQELDYWKRRAAAENTPEMRNLVVQLQNHVNLSKNHTKQVALRKMIEGSSMQVNLSEASDGRYITCKNGALD CRTGEFIPIWACDSIREKYPLIYLDAVYTPGLRSPAFIDHLKKVFDDNVSGLSEEERTLQMMELGRCFLRLLGYLLFPGN PEQVIIFLWGKGSNGKSTTIDVLREIFGSEMSEASVRELYAGSEDRPASGVARSLSKRVMLISEASDEESRGGRISADTV KALTGDAVTSRFRDMYEKSRPQRVVCTPVGVTNELPRFDKTLDYALLRRIFTIPFPHLFAGDERARDIRECLLAERDAVF SMVADELIAYTKEGLLPQPAFCASTQNELLAGFEVSAFIEECVEKSETGRVSRLELEEAYISWCARHDIPVGLAKIQMPG YDEYSQVNFRQGLSEKEKRGLFKGMRVYGFEEQRTNSQRYFKCRLK >Mature_605_residues ALNQPNPPLPAGYTAELTETITEPLSPKEAKIGLDVQSYRFKLYKFGQLVDILTTFDTGPDLRRAVREHIIDTEPEGPEK EFLLRFFDPASTPPWERKTMIRGQLPTPDALLNSLNDEGNAVRFEKEAGGNLVYDIASGQWFAFITNHWEPAREKLGKVL RLVGKSLEQELDYWKRRAAAENTPEMRNLVVQLQNHVNLSKNHTKQVALRKMIEGSSMQVNLSEASDGRYITCKNGALDC RTGEFIPIWACDSIREKYPLIYLDAVYTPGLRSPAFIDHLKKVFDDNVSGLSEEERTLQMMELGRCFLRLLGYLLFPGNP EQVIIFLWGKGSNGKSTTIDVLREIFGSEMSEASVRELYAGSEDRPASGVARSLSKRVMLISEASDEESRGGRISADTVK ALTGDAVTSRFRDMYEKSRPQRVVCTPVGVTNELPRFDKTLDYALLRRIFTIPFPHLFAGDERARDIRECLLAERDAVFS MVADELIAYTKEGLLPQPAFCASTQNELLAGFEVSAFIEECVEKSETGRVSRLELEEAYISWCARHDIPVGLAKIQMPGY DEYSQVNFRQGLSEKEKRGLFKGMRVYGFEEQRTNSQRYFKCRLK
Specific function: Unknown
COG id: COG3378
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68687; Mature: 68556
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALNQPNPPLPAGYTAELTETITEPLSPKEAKIGLDVQSYRFKLYKFGQLVDILTTFDTG CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCC PDLRRAVREHIIDTEPEGPEKEFLLRFFDPASTPPWERKTMIRGQLPTPDALLNSLNDEG HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCC NAVRFEKEAGGNLVYDIASGQWFAFITNHWEPAREKLGKVLRLVGKSLEQELDYWKRRAA CEEEEECCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC AENTPEMRNLVVQLQNHVNLSKNHTKQVALRKMIEGSSMQVNLSEASDGRYITCKNGALD CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCC CRTGEFIPIWACDSIREKYPLIYLDAVYTPGLRSPAFIDHLKKVFDDNVSGLSEEERTLQ CCCCCEEEEEECHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH MMELGRCFLRLLGYLLFPGNPEQVIIFLWGKGSNGKSTTIDVLREIFGSEMSEASVRELY HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH AGSEDRPASGVARSLSKRVMLISEASDEESRGGRISADTVKALTGDAVTSRFRDMYEKSR CCCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC PQRVVCTPVGVTNELPRFDKTLDYALLRRIFTIPFPHLFAGDERARDIRECLLAERDAVF CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHH SMVADELIAYTKEGLLPQPAFCASTQNELLAGFEVSAFIEECVEKSETGRVSRLELEEAY HHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHCCHHHHHHHHHHHHHCCCCEEHHHHHHHH ISWCARHDIPVGLAKIQMPGYDEYSQVNFRQGLSEKEKRGLFKGMRVYGFEEQRTNSQRY HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCCCEE FKCRLK EEEECC >Mature Secondary Structure ALNQPNPPLPAGYTAELTETITEPLSPKEAKIGLDVQSYRFKLYKFGQLVDILTTFDTG CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCC PDLRRAVREHIIDTEPEGPEKEFLLRFFDPASTPPWERKTMIRGQLPTPDALLNSLNDEG HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCC NAVRFEKEAGGNLVYDIASGQWFAFITNHWEPAREKLGKVLRLVGKSLEQELDYWKRRAA CEEEEECCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC AENTPEMRNLVVQLQNHVNLSKNHTKQVALRKMIEGSSMQVNLSEASDGRYITCKNGALD CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCC CRTGEFIPIWACDSIREKYPLIYLDAVYTPGLRSPAFIDHLKKVFDDNVSGLSEEERTLQ CCCCCEEEEEECHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH MMELGRCFLRLLGYLLFPGNPEQVIIFLWGKGSNGKSTTIDVLREIFGSEMSEASVRELY HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH AGSEDRPASGVARSLSKRVMLISEASDEESRGGRISADTVKALTGDAVTSRFRDMYEKSR CCCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC PQRVVCTPVGVTNELPRFDKTLDYALLRRIFTIPFPHLFAGDERARDIRECLLAERDAVF CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHH SMVADELIAYTKEGLLPQPAFCASTQNELLAGFEVSAFIEECVEKSETGRVSRLELEEAY HHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHCCHHHHHHHHHHHHHCCCCEEHHHHHHHH ISWCARHDIPVGLAKIQMPGYDEYSQVNFRQGLSEKEKRGLFKGMRVYGFEEQRTNSQRY HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCCCEE FKCRLK EEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA