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The map label for this gene is rnp4

Identifier: 124486300

GI number: 124486300

Start: 1520345

End: 1520665

Strand: Reverse

Name: rnp4

Synonym: Mlab_1485

Alternate gene names: 124486300

Gene position: 1520665-1520345 (Counterclockwise)

Preceding gene: 124486301

Following gene: 124486299

Centisome position: 84.25

GC content: 50.47

Gene sequence:

>321_bases
ATGGCAAAAGCAGAAAAAGGCGTCTCAGCAAAAAAAATCGCTCAGGAACGGGTCGATATTTTGTTTGAACGTGCAAAAGA
GGCACGAGATGAGCCGGAACTCTCTGCTCGCTATGTCTCCCTTGCCCGCGAGATGGCGATGAAACAGCGTGTTCGTCTGG
CACACTATCACCGGCGCTCATTCTGCCCGTCATGTCATGCTTACTTTATCCCGGGAACAAATCTCCGGGTCAGGATTCAG
CATGGGAAGATCATCTATACCTGCGGTATCTGCGGAGCAGTTACCCGCATCCCCCTCAATAAAAAAACCGAATCAAGGTG
A

Upstream 100 bases:

>100_bases
CTGTGCCGATCGCCTGACGGTTGTCGGCCGTCATGTGAAAATACTTCCCGAGGCAAACAATCAATAGGTCTGAACCCTTA
TTGTATAAGGCATAATCTCT

Downstream 100 bases:

>100_bases
AAAACAATCTCAGATATTACAGAATCCTATATCCAGACCCTGAAACCAACCATATGGGTCGGCAAAAACGGCTACACAGA
AGATCTCGTTGCCGAGGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: RNase P component 4

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MAKAEKGVSAKKIAQERVDILFERAKEARDEPELSARYVSLAREMAMKQRVRLAHYHRRSFCPSCHAYFIPGTNLRVRIQ
HGKIIYTCGICGAVTRIPLNKKTESR

Sequences:

>Translated_106_residues
MAKAEKGVSAKKIAQERVDILFERAKEARDEPELSARYVSLAREMAMKQRVRLAHYHRRSFCPSCHAYFIPGTNLRVRIQ
HGKIIYTCGICGAVTRIPLNKKTESR
>Mature_105_residues
AKAEKGVSAKKIAQERVDILFERAKEARDEPELSARYVSLAREMAMKQRVRLAHYHRRSFCPSCHAYFIPGTNLRVRIQH
GKIIYTCGICGAVTRIPLNKKTESR

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends

COG id: COG2023

COG function: function code J; RNase P subunit RPR2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNP4_METLZ (A2STJ3)

Other databases:

- EMBL:   CP000559
- RefSeq:   YP_001030916.1
- ProteinModelPortal:   A2STJ3
- SMR:   A2STJ3
- STRING:   A2STJ3
- GeneID:   4795482
- GenomeReviews:   CP000559_GR
- KEGG:   mla:Mlab_1485
- eggNOG:   arNOG12643
- HOGENOM:   HBG731499
- OMA:   HVVITCL
- BioCyc:   MLAB410358:MLAB_1485-MONOMER
- HAMAP:   MF_00757
- InterPro:   IPR016432
- InterPro:   IPR007175
- PIRSF:   PIRSF004878

Pfam domain/function: PF04032 Rpr2

EC number: =3.1.26.5

Molecular weight: Translated: 12159; Mature: 12028

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAEKGVSAKKIAQERVDILFERAKEARDEPELSARYVSLAREMAMKQRVRLAHYHRRS
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FCPSCHAYFIPGTNLRVRIQHGKIIYTCGICGAVTRIPLNKKTESR
CCCCCCEEEECCCCEEEEEECCCEEEECCCCHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AKAEKGVSAKKIAQERVDILFERAKEARDEPELSARYVSLAREMAMKQRVRLAHYHRRS
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FCPSCHAYFIPGTNLRVRIQHGKIIYTCGICGAVTRIPLNKKTESR
CCCCCCEEEECCCCEEEEEECCCEEEECCCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA