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The map label for this gene is rpoK

Identifier: 124486059

GI number: 124486059

Start: 1269734

End: 1269922

Strand: Reverse

Name: rpoK

Synonym: Mlab_1239

Alternate gene names: 124486059

Gene position: 1269922-1269734 (Counterclockwise)

Preceding gene: 124486060

Following gene: 124486058

Centisome position: 70.36

GC content: 50.26

Gene sequence:

>189_bases
ATGACATATACACGTTATGAACGTGCCCGCATCGTCGGGGCACGTGCTTTACAGATTTCTATGGGAGCTCCGGTTCTCGT
GAAAACCGTAAAGATTGATCCTCTTGACATTGCGTTAGAGGAGTTCGACGCTGATCGGGTCCCGATAACGGTGAAACGCC
AGTTCGGTACCTGCTCAGAGGTGCTTTAA

Upstream 100 bases:

>100_bases
TAGCCTGGACCATCCTATTACGTTCGGGACGTAGTGACCTGAGTTCGAATCTCAGCGACCCCATTTTTCCATTCTCTCTT
ATTTGTGGATGTGATTTTCT

Downstream 100 bases:

>100_bases
GTATGACTGAAATTTCCGACATTCTTCTTCGGACAATTCTGGACTCACGCGGCAATCCGACCGTCGAAGCCGAGATCTCC
ACGATCTCCGGCGGATTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 62; Mature: 61

Protein sequence:

>62_residues
MTYTRYERARIVGARALQISMGAPVLVKTVKIDPLDIALEEFDADRVPITVKRQFGTCSEVL

Sequences:

>Translated_62_residues
MTYTRYERARIVGARALQISMGAPVLVKTVKIDPLDIALEEFDADRVPITVKRQFGTCSEVL
>Mature_61_residues
TYTRYERARIVGARALQISMGAPVLVKTVKIDPLDIALEEFDADRVPITVKRQFGTCSEVL

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoK/eukaryotic RPB6 RNA polymerase subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOK_METLZ (A2SSV2)

Other databases:

- EMBL:   CP000559
- RefSeq:   YP_001030675.1
- ProteinModelPortal:   A2SSV2
- SMR:   A2SSV2
- STRING:   A2SSV2
- GeneID:   4795874
- GenomeReviews:   CP000559_GR
- KEGG:   mla:Mlab_1239
- eggNOG:   arNOG14104
- HOGENOM:   HBG646526
- OMA:   VIPITVK
- BioCyc:   MLAB410358:MLAB_1239-MONOMER
- HAMAP:   MF_00192
- InterPro:   IPR020708
- InterPro:   IPR006111
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- PANTHER:   PTHR10773

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 6953; Mature: 6822

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS01111 RNA_POL_K_14KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYTRYERARIVGARALQISMGAPVLVKTVKIDPLDIALEEFDADRVPITVKRQFGTCSE
CCCCCCCCEEEECEEEEEEECCCCEEEEEEEECCCEEEHHHCCCCCCCEEEEECCCCCCC
VL
CC
>Mature Secondary Structure 
TYTRYERARIVGARALQISMGAPVLVKTVKIDPLDIALEEFDADRVPITVKRQFGTCSE
CCCCCCCEEEECEEEEEEECCCCEEEEEEEECCCEEEHHHCCCCCCCEEEEECCCCCCC
VL
CC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA