| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
Click here to switch to the map view.
The map label for this gene is 124485724
Identifier: 124485724
GI number: 124485724
Start: 894203
End: 895600
Strand: Reverse
Name: 124485724
Synonym: Mlab_0902
Alternate gene names: NA
Gene position: 895600-894203 (Counterclockwise)
Preceding gene: 124485725
Following gene: 124485723
Centisome position: 49.62
GC content: 41.27
Gene sequence:
>1398_bases ATGGCAAAACAGTGTGATGTTTTGATTCTTGGTGCGGGCCCAGCGGGGCTTACTGCGGGCTATAAATTGGCTGAGGCTGG TGTATCTATTTGCATTGTAGATAAACAGGAGCATGTTGGTGGACTTGCCAAAACTCTGCGGCACGGTGACTGTTTATTGG ATATTGGGCCTCATATTCTCTGTAGTAGGGAATATGTCTATGATTTCAATCCTGAGATGTATACATTTATCAAGGCTCTA TTACAGGAGGATATTTATGAGTATGAGTCTGAACACCGAAAATATCTCGAATCTATGCAGGTGGGTCAAGTCCGCTATAA ATATCCGGTAAGCATAATGAACGCTCTCATAAACGCTGGGCTTGGAAAATCCATGCATATAGGCTGGGACTATTTGCGTG CCAAATCTTCTAAAAAGTCAAATAGTAATGATTATGAAACCAGCCTTGTTTCATCTCTTGGACAATCATTAGCAGAGTTA TTTTTATTGAATATTGGGGAGAAAACGTGGGGGGTGCCCTGTGGTGCTATGTCACAGGATGTTGCATGGAGAGTTGGTGA ATTCTCGATGCTGGACGTTTTCAAAAAACAGTTCAGCACTATGATCGCCTCCCTCCAGAAGAAAGGGGATCCTGTTAACT ATCCAAAACACGGTATTGGGGAGATATGTGACAGACTCAAGCAGGAGATCGATGCTAAAAATATTTGTGACTGGTTCCTC TCTGCGACTCCAAGTAATATCTTGGTGGAGAATGGTTCGGTTGTATCGGTTGATGTTGTCTGTAGTGATGGTAATGTAGA GACAATATATCCCAAACATCTCATCTCCTCAATACCTATGCCTTATTTATTAAGTGCTATGCGTCCTTTCCCGCCAGAGG ATGTACAGGCTGCCGGTCAGAGTCTTCGATGCCGATGTCATATTTGTGTATATCTTGTGTTCTCTGTCGATAGTATTCTC AAAGAGCATTGTATCTATTTTGCTGATCCAAAAATTCCCTTTTCCAGAATGATGGAGCAAAAACACTATTCTGATATGAT GATTTCTGATGGTAAGACGGTTCTTGCCATAGAATATTTTAGCTGGATTGAGGGTGGCATTTGGAGCATGAAGGATCAGG AGCTTTATGATTTAACTGTTGAATGGCTGAAGCGTTTGTCGATAATACAGAATCAGGATATAATTGATTACTTTATTAAC AGGGAGACTGATGCATATCCTGCTTATGAGTTGGGATACCGGCAGCATCTGGAGAAGGTCATGAGTTATCTGGATGGTAT CACTAATCTTGATGTTATTGGGAGGACCGGGTCATTCACATATATTGGACAGTATAAGGCGATGCAGATGGGATGGGATG TTGTTAAAAATATAAAAATCAAATGTGGAGTATTGTAA
Upstream 100 bases:
>100_bases ATATTGTATGCGGTGGCGCAGATGATACAGATGGTGGGGAGGGAATGAATCTATATGTTCACTCTCGAAGCAGTAACCAA TACGAAGGAAAGGAACTAAA
Downstream 100 bases:
>100_bases TATGAAGATACTAAGAGTTTCAAGCGATCTATATCCGGCATTTGTGGGGGGCATTGCTCTTCATGTCCATGAACTTTCAG TTATGCAATCAAAGATGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: Amine Oxidase Flavin-Containing Superfamily; Amine Oxidase Flavin-Containing; Flavin Containing Amine Oxidoreductase; FAD Dependent Oxidoreductase; Oxidoreductase; Glycosyl Transferase Family 2 Protein; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; FAD-Dependent Oxidoreductase; UDP-Galactopyranose Mutase; Protoporphyrinogen Oxidase-Like Protein; Oxidase
Number of amino acids: Translated: 465; Mature: 464
Protein sequence:
>465_residues MAKQCDVLILGAGPAGLTAGYKLAEAGVSICIVDKQEHVGGLAKTLRHGDCLLDIGPHILCSREYVYDFNPEMYTFIKAL LQEDIYEYESEHRKYLESMQVGQVRYKYPVSIMNALINAGLGKSMHIGWDYLRAKSSKKSNSNDYETSLVSSLGQSLAEL FLLNIGEKTWGVPCGAMSQDVAWRVGEFSMLDVFKKQFSTMIASLQKKGDPVNYPKHGIGEICDRLKQEIDAKNICDWFL SATPSNILVENGSVVSVDVVCSDGNVETIYPKHLISSIPMPYLLSAMRPFPPEDVQAAGQSLRCRCHICVYLVFSVDSIL KEHCIYFADPKIPFSRMMEQKHYSDMMISDGKTVLAIEYFSWIEGGIWSMKDQELYDLTVEWLKRLSIIQNQDIIDYFIN RETDAYPAYELGYRQHLEKVMSYLDGITNLDVIGRTGSFTYIGQYKAMQMGWDVVKNIKIKCGVL
Sequences:
>Translated_465_residues MAKQCDVLILGAGPAGLTAGYKLAEAGVSICIVDKQEHVGGLAKTLRHGDCLLDIGPHILCSREYVYDFNPEMYTFIKAL LQEDIYEYESEHRKYLESMQVGQVRYKYPVSIMNALINAGLGKSMHIGWDYLRAKSSKKSNSNDYETSLVSSLGQSLAEL FLLNIGEKTWGVPCGAMSQDVAWRVGEFSMLDVFKKQFSTMIASLQKKGDPVNYPKHGIGEICDRLKQEIDAKNICDWFL SATPSNILVENGSVVSVDVVCSDGNVETIYPKHLISSIPMPYLLSAMRPFPPEDVQAAGQSLRCRCHICVYLVFSVDSIL KEHCIYFADPKIPFSRMMEQKHYSDMMISDGKTVLAIEYFSWIEGGIWSMKDQELYDLTVEWLKRLSIIQNQDIIDYFIN RETDAYPAYELGYRQHLEKVMSYLDGITNLDVIGRTGSFTYIGQYKAMQMGWDVVKNIKIKCGVL >Mature_464_residues AKQCDVLILGAGPAGLTAGYKLAEAGVSICIVDKQEHVGGLAKTLRHGDCLLDIGPHILCSREYVYDFNPEMYTFIKALL QEDIYEYESEHRKYLESMQVGQVRYKYPVSIMNALINAGLGKSMHIGWDYLRAKSSKKSNSNDYETSLVSSLGQSLAELF LLNIGEKTWGVPCGAMSQDVAWRVGEFSMLDVFKKQFSTMIASLQKKGDPVNYPKHGIGEICDRLKQEIDAKNICDWFLS ATPSNILVENGSVVSVDVVCSDGNVETIYPKHLISSIPMPYLLSAMRPFPPEDVQAAGQSLRCRCHICVYLVFSVDSILK EHCIYFADPKIPFSRMMEQKHYSDMMISDGKTVLAIEYFSWIEGGIWSMKDQELYDLTVEWLKRLSIIQNQDIIDYFINR ETDAYPAYELGYRQHLEKVMSYLDGITNLDVIGRTGSFTYIGQYKAMQMGWDVVKNIKIKCGVL
Specific function: Unknown
COG id: COG1232
COG function: function code H; Protoporphyrinogen oxidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52538; Mature: 52407
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKQCDVLILGAGPAGLTAGYKLAEAGVSICIVDKQEHVGGLAKTLRHGDCLLDIGPHIL CCCCCCEEEECCCCCCCHHCCHHHHCCCEEEEECCHHHHHHHHHHHHCCCEEEECCCCEE CSREYVYDFNPEMYTFIKALLQEDIYEYESEHRKYLESMQVGQVRYKYPVSIMNALINAG ECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCC LGKSMHIGWDYLRAKSSKKSNSNDYETSLVSSLGQSLAELFLLNIGEKTWGVPCGAMSQD CCCCEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCC VAWRVGEFSMLDVFKKQFSTMIASLQKKGDPVNYPKHGIGEICDRLKQEIDAKNICDWFL HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH SATPSNILVENGSVVSVDVVCSDGNVETIYPKHLISSIPMPYLLSAMRPFPPEDVQAAGQ HCCCCCEEEECCCEEEEEEEECCCCEEEECHHHHHHHCCHHHHHHHHCCCCCHHHHHCCH SLRCRCHICVYLVFSVDSILKEHCIYFADPKIPFSRMMEQKHYSDMMISDGKTVLAIEYF HCEEHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHCCCEECCCCEEEEEEHH SWIEGGIWSMKDQELYDLTVEWLKRLSIIQNQDIIDYFINRETDAYPAYELGYRQHLEKV HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHH MSYLDGITNLDVIGRTGSFTYIGQYKAMQMGWDVVKNIKIKCGVL HHHHCCCCCCEEECCCCCEEEEECHHHHHHHHHHHHCCCEEECCC >Mature Secondary Structure AKQCDVLILGAGPAGLTAGYKLAEAGVSICIVDKQEHVGGLAKTLRHGDCLLDIGPHIL CCCCCEEEECCCCCCCHHCCHHHHCCCEEEEECCHHHHHHHHHHHHCCCEEEECCCCEE CSREYVYDFNPEMYTFIKALLQEDIYEYESEHRKYLESMQVGQVRYKYPVSIMNALINAG ECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCC LGKSMHIGWDYLRAKSSKKSNSNDYETSLVSSLGQSLAELFLLNIGEKTWGVPCGAMSQD CCCCEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCC VAWRVGEFSMLDVFKKQFSTMIASLQKKGDPVNYPKHGIGEICDRLKQEIDAKNICDWFL HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH SATPSNILVENGSVVSVDVVCSDGNVETIYPKHLISSIPMPYLLSAMRPFPPEDVQAAGQ HCCCCCEEEECCCEEEEEEEECCCCEEEECHHHHHHHCCHHHHHHHHCCCCCHHHHHCCH SLRCRCHICVYLVFSVDSILKEHCIYFADPKIPFSRMMEQKHYSDMMISDGKTVLAIEYF HCEEHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHCCCEECCCCEEEEEEHH SWIEGGIWSMKDQELYDLTVEWLKRLSIIQNQDIIDYFINRETDAYPAYELGYRQHLEKV HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHH MSYLDGITNLDVIGRTGSFTYIGQYKAMQMGWDVVKNIKIKCGVL HHHHCCCCCCEEECCCCCEEEEECHHHHHHHHHHHHCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA